Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.1e-116 423.3 222 100.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.3e-19 100.9 59 86.4
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 4.9e-19 99.0 52 96.2
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.9e-19 99.0 52 96.2
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.6e-17 94.0 59 79.7
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 3.5e-17 92.8 61 82.0
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 7.8e-17 91.7 57 80.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.3e-16 90.9 53 83.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.3e-16 90.9 53 83.0
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.7e-16 90.5 53 83.0
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.3e-16 90.1 57 78.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 3.0e-16 89.7 53 81.1
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 3.0e-16 89.7 53 81.1
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.0e-16 89.7 57 78.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.0e-16 89.7 53 83.0
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.0e-16 89.7 53 83.0
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 3.0e-16 89.7 53 83.0
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.0e-16 89.7 57 78.9
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.0e-16 89.7 53 84.9
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 5.1e-16 89.0 53 81.1
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 6.6e-16 88.6 52 84.6
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 6.6e-16 88.6 52 84.6
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 6.6e-16 88.6 53 84.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 6.6e-16 88.6 57 78.9
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 8.7e-16 88.2 59 72.9
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 8.7e-16 88.2 53 81.1
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 8.7e-16 88.2 53 81.1
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 8.7e-16 88.2 52 84.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 8.7e-16 88.2 52 84.6
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.1e-15 87.8 53 79.2
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.1e-15 87.8 54 81.5
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-15 87.4 48 87.5
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-15 87.4 48 87.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.9e-15 87.0 53 81.1
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.5e-15 86.7 50 86.0
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.5e-15 86.7 53 81.1
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 3.3e-15 86.3 51 82.4
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 3.3e-15 86.3 50 88.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 3.3e-15 86.3 57 77.2
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 3.3e-15 86.3 62 74.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 4.3e-15 85.9 59 71.2
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.3e-15 85.9 53 81.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 4.3e-15 85.9 55 83.6
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.3e-15 85.9 52 80.8
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 5.6e-15 85.5 50 82.0
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 7.3e-15 85.1 59 76.3
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.3e-15 85.1 52 82.7
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 7.3e-15 85.1 48 85.4
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 9.6e-15 84.7 53 77.4
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 9.6e-15 84.7 53 79.2
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.3e-14 84.3 45 88.9
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.3e-14 84.3 57 75.4
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.3e-14 84.3 50 86.0
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.8e-14 83.2 56 78.6
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 4.8e-14 82.4 56 75.0
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 4.8e-14 82.4 52 78.8
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 6.2e-14 82.0 46 87.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 8.1e-14 81.6 52 78.8
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 8.1e-14 81.6 46 82.6
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.1e-13 81.3 44 88.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.4e-13 80.9 58 70.7
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.4e-13 80.9 58 70.7
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.4e-13 80.9 55 78.2
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.8e-13 80.5 44 88.6
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.8e-13 80.5 57 71.9
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 1.8e-13 80.5 56 69.6
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 2.4e-13 80.1 53 71.7
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.4e-13 80.1 53 75.5
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 3.1e-13 79.7 53 75.5
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 3.1e-13 79.7 54 75.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 3.1e-13 79.7 54 75.9
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.1e-13 79.7 54 75.9
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.1e-13 79.7 56 76.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 4.0e-13 79.3 43 88.4
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 6.9e-13 78.6 54 74.1
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.2e-12 77.8 42 90.5
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.2e-12 77.8 47 87.2
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.5e-12 77.4 54 74.1
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.5e-12 77.4 54 74.1
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.6e-12 76.6 54 70.4
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.6e-12 76.6 46 82.6
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.5e-12 75.9 42 88.1
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.8e-12 75.5 42 88.1
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 5.8e-12 75.5 59 66.1
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 9.9e-12 74.7 47 74.5
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.3e-11 74.3 49 79.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.2e-11 73.6 44 79.5
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.9e-11 73.2 44 79.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 3.8e-11 72.8 57 70.2
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 3.8e-11 72.8 52 73.1
Dinv09220 Davidia involucrata HOM05D008877 ORTHO05D006370 6.4e-11 72.0 58 46.6
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 6.4e-11 72.0 41 80.5
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.1e-10 71.2 64 59.4
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.9e-10 70.5 51 72.5
Dinv32194 Davidia involucrata HOM05D000121 ORTHO05D001726 2.4e-10 70.1 58 55.2
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.4e-10 70.1 59 69.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 7.1e-10 68.6 54 70.4
Dinv03792 Davidia involucrata HOM05D012569 ORTHO05D006370 1.0e-08 64.7 119 31.9
Dinv36988 Davidia involucrata HOM05D010100 ORTHO05D006370 1.3e-08 64.3 58 46.6
Dinv08590 Davidia involucrata HOM05D010100 ORTHO05D006370 1.8e-08 63.9 57 49.1
Dinv02443 Davidia involucrata HOM05D010100 ORTHO05D006370 2.3e-08 63.5 58 48.3
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.9e-08 62.8 43 65.1
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 8.7e-08 61.6 56 58.9
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 8.7e-08 61.6 56 58.9
Dinv07139 Davidia involucrata HOM05D010100 ORTHO05D006370 1.1e-07 61.2 58 50.0
Solyc09g005450.1 Solanum lycopersicum HOM05D008032 ORTHO05D006370 2.5e-07 60.1 90 37.8
Sopen09g001430 Solanum pennellii HOM05D000003 ORTHO05D000004 2.5e-07 60.1 90 37.8
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.3e-07 59.3 54 61.1
Dinv09222 Davidia involucrata HOM05D025719 ORTHO05D006370 4.3e-07 59.3 58 43.1
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.6e-07 58.9 44 65.9
Dinv11541 Davidia involucrata HOM05D013474 ORTHO05D006370 1.3e-06 57.8 57 43.9
SHI26093 Sapria himalayana HOM05D000003 ORTHO05D000004 1.6e-06 57.4 87 36.8
PGSC0003DMG400013120 Solanum tuberosum HOM05D008877 ORTHO05D006370 2.1e-06 57.0 58 44.8
PGSC0003DMG400027282 Solanum tuberosum HOM05D008877 ORTHO05D006370 3.6e-06 56.2 58 41.4
Dinv04832 Davidia involucrata HOM05D012569 ORTHO05D006370 6.2e-06 55.5 48 50.0
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 8.1e-06 55.1 63 50.8
Dinv11953 Davidia involucrata HOM05D062003 ORTHO05D006370 8.1e-06 55.1 61 44.3
PGSC0003DMG400004492 Solanum tuberosum HOM05D008877 ORTHO05D006370 8.1e-06 55.1 109 33.9
PGSC0003DMG400021934 Solanum tuberosum HOM05D008877 ORTHO05D006370 8.1e-06 55.1 62 35.5


User provided reference genes

Program Settings