Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 0.0e+00 1835.5 958 100.0
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 1.2e-154 551.6 851 41.7
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.3e-150 537.3 854 40.5
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.3e-148 531.6 852 39.9
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.9e-146 522.7 845 40.1
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.4e-142 511.5 850 38.9
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.4e-139 501.5 850 38.8
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.2e-138 498.4 848 39.4
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 3.3e-136 490.3 841 38.0
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.3e-136 490.0 849 38.4
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 5.6e-136 489.6 852 38.3
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.2e-134 483.0 844 38.5
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.6e-133 480.7 839 39.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.4e-133 480.3 849 37.3
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.9e-132 477.2 328 74.4
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.7e-132 476.9 849 37.8
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.1e-131 475.3 847 37.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.9e-131 474.6 849 37.6
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.4e-131 474.2 849 37.6
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 3.9e-129 466.8 852 37.9
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.5e-128 464.9 852 37.3
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 5.6e-128 463.0 847 37.1
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.6e-127 461.5 845 36.9
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.1e-127 461.1 854 37.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 6.2e-127 459.5 848 37.3
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.2e-127 459.5 844 37.0
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.3e-126 457.6 850 36.8
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 4.0e-126 456.8 845 36.6
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 4.0e-126 456.8 849 36.7
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 5.2e-126 456.4 328 70.4
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 2.6e-125 454.1 851 37.0
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.3e-124 451.8 851 36.8
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.3e-124 451.8 842 36.5
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 2.2e-124 451.1 848 37.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 2.2e-124 451.1 843 36.4
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 4.9e-124 449.9 860 36.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 4.9e-124 449.9 844 36.6
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 8.3e-124 449.1 855 36.0
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 8.3e-124 449.1 849 36.4
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 8.3e-124 449.1 841 36.5
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 4.1e-123 446.8 851 36.7
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.1e-123 446.8 328 70.4
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 9.2e-123 445.7 842 36.1
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.3e-121 441.8 830 35.9
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 4.3e-120 436.8 850 36.0
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 5.6e-120 436.4 848 34.9
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.2e-119 435.3 849 35.8
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.6e-119 434.9 341 66.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 2.1e-119 434.5 843 35.3
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-118 431.8 847 34.7
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.4e-118 431.0 829 35.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 5.2e-118 429.9 817 36.2
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 6.8e-118 429.5 865 35.1
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 2.6e-117 427.6 848 35.1
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 4.4e-117 426.8 841 35.6
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 9.9e-117 425.6 844 35.5
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.4e-116 422.9 848 35.1
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.1e-115 422.2 846 35.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 5.4e-115 419.9 304 69.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 2.7e-114 417.5 848 34.8
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 3.5e-114 417.2 868 34.6
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 2.3e-113 414.5 328 64.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 5.1e-113 413.3 824 35.6
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 8.7e-113 412.5 843 34.8
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 8.7e-113 412.5 843 34.8
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.9e-112 411.4 846 35.3
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.9e-112 411.4 846 35.2
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 7.3e-112 409.5 843 35.0
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 2.1e-111 407.9 850 34.7
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.8e-111 407.5 847 35.2
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 4.8e-111 406.8 848 33.8
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 6.2e-111 406.4 331 64.7
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 2.4e-110 404.4 843 34.4
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.3e-108 398.7 848 33.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 4.9e-108 396.7 817 34.8
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.4e-107 395.2 335 63.9
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 5.4e-107 393.3 849 33.5
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.1e-104 385.6 899 32.4
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 4.3e-104 383.6 850 32.6
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 1.8e-102 378.3 802 33.9
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 6.9e-102 376.3 844 33.1
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 4.5e-101 373.6 798 34.0
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 9.9e-101 372.5 830 32.7
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.2e-100 371.3 302 61.9
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 1.6e-98 365.2 274 68.2
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 2.7e-98 364.4 823 32.9
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 5.1e-97 360.1 841 32.2
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.8e-95 353.6 836 32.2
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 6.2e-95 353.2 812 32.5
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 6.9e-94 349.7 856 31.3
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 5.8e-93 346.7 319 58.6
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 1.3e-92 345.5 822 32.2
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.9e-92 343.6 848 31.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 4.2e-91 340.5 678 34.2
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.0e-89 335.9 907 30.0
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.3e-89 335.5 301 59.1
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 3.9e-89 334.0 861 30.5
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 2.1e-87 328.2 845 30.5
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.1e-82 311.6 848 30.3
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.8e-81 308.5 856 30.1
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.1e-78 297.4 357 47.6
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 3.4e-77 294.3 675 32.3
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 4.5e-77 293.9 846 28.6
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 1.8e-73 282.0 864 30.3
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 3.9e-73 280.8 843 28.7
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 8.8e-73 279.6 304 53.9
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.3e-72 277.7 847 29.9
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.8e-71 274.6 822 29.0
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 4.8e-71 273.9 332 48.2
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 6.3e-71 273.5 250 60.0
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 9.1e-70 269.6 283 52.7
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 7.2e-67 260.0 913 26.6
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.3e-64 251.1 361 42.9
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 4.8e-63 247.3 346 47.7
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-56 225.3 275 45.1
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.6e-53 214.9 150 65.3
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.2e-51 206.8 113 85.0
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 1.6e-50 205.7 116 81.0
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 2.1e-50 205.3 113 85.0
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.1e-46 193.0 114 77.2
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.0e-45 188.7 109 81.7
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.6e-42 177.9 113 79.6
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 4.4e-40 171.0 164 51.8
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 3.1e-38 164.9 151 52.3
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 6.6e-36 157.1 224 40.2
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.4e-33 149.4 86 81.4
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.3e-31 142.9 188 42.0
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.8e-30 139.0 164 40.9
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.1e-25 121.7 76 76.3
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 3.2e-22 111.7 60 81.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.3e-20 106.3 83 61.4
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 4.7e-18 97.8 123 43.9
Dinv20016 Davidia involucrata HOM05D014133 ORTHO05D178999 2.1e-13 82.4 53 73.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 6.0e-13 80.9 43 83.7
Dinv32662 Davidia involucrata HOM05D014133 ORTHO05D017285 2.5e-11 75.5 92 50.0
Dinv06049 Davidia involucrata HOM05D014133 ORTHO05D017285 1.2e-10 73.2 119 42.0
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-09 69.7 94 43.6
Dinv08516 Davidia involucrata HOM05D014133 ORTHO05D180254 4.0e-09 68.2 83 53.0
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.2e-08 66.6 49 63.3
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 2.0e-08 65.9 45 68.9
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.6e-08 65.5 72 50.0
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 3.4e-08 65.1 102 43.1
Dinv41395 Davidia involucrata HOM05D014133 ORTHO05D184189 9.9e-08 63.5 59 57.6
Dinv39532 Davidia involucrata HOM05D054880 ORTHO05D183969 3.7e-07 61.6 49 65.3
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 9.2e-06 57.0 99 36.4


User provided reference genes

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