Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-36 156.0 74 100.0
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-36 156.0 74 100.0
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 2.4e-26 121.7 67 86.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.1e-22 108.6 55 98.2
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 2.1e-14 82.0 46 80.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.3e-13 79.3 46 87.0
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.8e-13 79.0 46 80.4
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.3e-13 78.6 45 84.4
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.0e-13 78.2 46 80.4
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.9e-13 77.8 53 67.9
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 6.7e-13 77.0 46 80.4
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 6.7e-13 77.0 53 67.9
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.1e-12 76.3 53 75.5
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.1e-12 76.3 53 67.9
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.5e-12 75.9 46 82.6
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.5e-12 75.9 53 66.0
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.9e-12 75.5 53 73.6
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 1.9e-12 75.5 46 80.4
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.9e-12 75.5 46 80.4
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.5e-12 75.1 46 82.6
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.3e-12 74.7 46 73.9
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 4.3e-12 74.3 53 66.0
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 5.6e-12 73.9 52 75.0
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 7.4e-12 73.6 46 80.4
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 7.4e-12 73.6 52 71.2
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 7.4e-12 73.6 46 80.4
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 9.6e-12 73.2 46 80.4
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 9.6e-12 73.2 46 80.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.3e-11 72.8 46 78.3
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.3e-11 72.8 52 73.1
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.6e-11 72.4 46 78.3
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.6e-11 72.4 46 80.4
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.1e-11 72.0 46 80.4
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 2.1e-11 72.0 46 76.1
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.1e-11 72.0 46 78.3
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.1e-11 72.0 52 73.1
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.8e-11 71.6 46 78.3
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.8e-11 71.6 46 78.3
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.8e-11 71.6 46 78.3
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 2.8e-11 71.6 46 73.9
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.8e-11 71.6 47 72.3
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 2.8e-11 71.6 52 71.2
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.7e-11 71.2 46 78.3
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 3.7e-11 71.2 45 80.0
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.7e-11 71.2 46 73.9
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 3.7e-11 71.2 52 67.3
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 4.8e-11 70.9 46 76.1
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.8e-11 70.9 46 76.1
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.8e-11 70.9 46 76.1
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 4.8e-11 70.9 46 78.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 4.8e-11 70.9 46 78.3
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 6.2e-11 70.5 46 78.3
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 6.2e-11 70.5 46 80.4
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 6.2e-11 70.5 46 76.1
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 6.2e-11 70.5 46 73.9
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.2e-11 70.5 46 73.9
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 6.2e-11 70.5 46 78.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 8.1e-11 70.1 46 78.3
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 8.1e-11 70.1 46 76.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 8.1e-11 70.1 46 78.3
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 8.1e-11 70.1 46 76.1
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.1e-10 69.7 46 73.9
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.1e-10 69.7 45 80.0
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.1e-10 69.7 46 78.3
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.4e-10 69.3 46 78.3
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.4e-10 69.3 46 76.1
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.4e-10 69.3 54 63.0
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.4e-10 69.3 46 69.6
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.4e-10 69.3 46 78.3
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.8e-10 68.9 46 73.9
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.8e-10 68.9 46 76.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.4e-10 68.6 53 69.8
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 76.1
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 76.1
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 76.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 76.1
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 76.1
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 76.1
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.4e-10 68.6 46 73.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 3.1e-10 68.2 46 71.7
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 3.1e-10 68.2 46 78.3
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 4.0e-10 67.8 46 73.9
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 4.0e-10 67.8 52 69.2
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 5.3e-10 67.4 45 75.6
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 5.3e-10 67.4 46 71.7
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 5.3e-10 67.4 46 73.9
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 5.3e-10 67.4 46 71.7
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 5.3e-10 67.4 46 71.7
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 6.9e-10 67.0 45 75.6
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.2e-09 66.2 46 71.7
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.2e-09 66.2 46 71.7
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.5e-09 65.9 46 73.9
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.5e-09 65.9 53 62.3
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.5e-09 65.9 42 81.0
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.0e-09 65.5 53 66.0
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 2.6e-09 65.1 46 73.9
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.6e-09 65.1 46 69.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 3.4e-09 64.7 46 71.7
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 3.4e-09 64.7 46 71.7
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 4.5e-09 64.3 46 65.2
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 4.5e-09 64.3 46 67.4
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.5e-09 64.3 53 60.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 5.8e-09 63.9 47 61.7
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 5.8e-09 63.9 46 67.4
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 5.8e-09 63.9 46 69.6
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 69.6
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 7.6e-09 63.5 46 67.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 7.6e-09 63.5 46 71.7
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 7.6e-09 63.5 53 60.4
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 7.6e-09 63.5 53 60.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 7.6e-09 63.5 46 65.2
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.0e-08 63.2 53 62.3
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.0e-08 63.2 46 71.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-08 63.2 46 69.6
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.0e-08 63.2 46 69.6
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.0e-08 63.2 46 69.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.0e-08 63.2 46 69.6
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-08 63.2 46 65.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.3e-08 62.8 45 71.1
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 69.6
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 69.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 69.6
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 69.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-08 62.8 45 71.1
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 69.6
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 67.4
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.3e-08 62.8 46 63.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-08 62.4 46 67.4
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-08 62.4 46 65.2
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.2e-08 62.0 46 65.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 2.9e-08 61.6 45 68.9
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.5e-08 60.5 46 69.6
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.1e-07 59.7 53 56.6
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.1e-07 59.7 46 63.0
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.9e-07 58.9 46 67.4
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 2.5e-07 58.5 46 63.0
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 4.2e-07 57.8 48 60.4
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 1.2e-06 56.2 46 54.3
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.6e-06 55.8 51 56.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 3.5e-06 54.7 46 60.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.6e-06 54.3 46 56.5


User provided reference genes

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