Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 9.5e-60 233.4 126 100.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.5e-52 208.8 123 91.1
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 3.6e-51 204.9 116 91.4
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 4.0e-50 201.4 123 85.4
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 5.2e-50 201.1 116 89.7
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.5e-49 197.2 127 85.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.2e-48 195.7 125 84.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 4.9e-48 194.5 119 84.9
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.9e-48 194.5 116 88.8
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.1e-47 193.4 121 86.0
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.4e-47 193.0 120 85.8
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.9e-47 192.6 116 85.3
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.4e-47 191.0 122 85.2
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.4e-47 191.0 122 85.2
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 5.4e-47 191.0 122 82.8
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 5.4e-47 191.0 115 86.1
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 9.2e-47 190.3 120 84.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 9.2e-47 190.3 116 87.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 9.2e-47 190.3 117 84.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 9.2e-47 190.3 118 86.4
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.6e-46 189.5 106 90.6
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.0e-46 189.1 117 86.3
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.0e-46 189.1 117 86.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.5e-46 188.3 116 85.3
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.6e-46 188.0 122 83.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 7.8e-46 187.2 117 85.5
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.0e-45 186.8 118 86.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.7e-45 186.0 120 83.3
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-45 185.7 117 85.5
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.3e-45 185.7 120 84.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.3e-45 185.7 120 84.2
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.3e-45 185.7 111 85.6
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.0e-45 185.3 124 80.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 3.0e-45 185.3 120 81.7
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.9e-45 184.9 120 80.8
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.9e-45 184.9 117 81.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 5.0e-45 184.5 111 85.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 6.6e-45 184.1 117 83.8
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.6e-45 183.7 124 79.8
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.1e-44 183.3 117 84.6
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.1e-44 183.3 124 78.2
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.1e-44 183.3 124 78.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.9e-44 182.6 120 83.3
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.9e-44 182.6 124 76.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.9e-44 182.6 124 76.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.5e-44 182.2 116 82.8
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.3e-44 181.8 124 80.6
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 3.3e-44 181.8 117 82.1
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.3e-44 181.8 124 76.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.3e-44 181.4 111 82.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 4.3e-44 181.4 117 82.9
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 5.6e-44 181.0 117 82.9
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 7.3e-44 180.6 116 81.0
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.2e-43 179.9 111 81.1
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.2e-43 179.9 116 82.8
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-43 179.9 115 81.7
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.6e-43 179.5 111 82.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.1e-43 179.1 111 82.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.6e-43 178.3 111 81.1
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.6e-43 178.3 111 81.1
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.6e-43 178.3 112 80.4
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 6.2e-43 177.6 117 79.5
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 6.2e-43 177.6 109 82.6
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 6.2e-43 177.6 110 81.8
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 6.2e-43 177.6 110 81.8
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 6.2e-43 177.6 124 77.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 8.1e-43 177.2 124 75.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.1e-42 176.8 111 80.2
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.4e-42 176.4 122 77.9
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.8e-42 176.0 101 87.1
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.8e-42 176.0 109 81.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.3e-42 175.6 113 77.9
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 2.3e-42 175.6 101 88.1
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.1e-42 175.3 121 80.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 3.1e-42 175.3 123 78.9
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.1e-42 175.3 111 80.2
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 5.2e-42 174.5 111 79.3
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 5.2e-42 174.5 100 87.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-42 174.5 100 87.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-42 174.5 100 87.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-42 174.5 100 87.0
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 5.2e-42 174.5 126 74.6
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 6.8e-42 174.1 111 78.4
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 8.9e-42 173.7 124 78.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 8.9e-42 173.7 110 80.0
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 8.9e-42 173.7 110 80.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 8.9e-42 173.7 113 78.8
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.2e-41 173.3 115 78.3
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 1.2e-41 173.3 115 77.4
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.5e-41 172.9 110 80.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-41 172.9 102 84.3
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-41 172.6 110 79.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 2.0e-41 172.6 110 79.1
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 2.0e-41 172.6 110 80.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.0e-41 172.6 100 86.0
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.6e-41 172.2 107 78.5
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 3.4e-41 171.8 115 77.4
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.3e-40 169.9 107 79.4
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.2e-40 169.1 101 84.2
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.9e-40 168.7 106 80.2
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 3.7e-40 168.3 116 77.6
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 3.7e-40 168.3 111 74.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.9e-40 167.9 110 78.2
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 7.1e-39 164.1 118 72.9
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.1e-39 164.1 120 74.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 9.2e-39 163.7 102 86.3
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.6e-38 162.9 121 70.2
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.6e-38 162.9 121 70.2
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.5e-38 161.8 114 74.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 6.0e-38 161.0 105 80.0
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.0e-37 160.2 98 79.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.0e-37 158.7 122 71.3
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 6.6e-37 157.5 112 71.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.9e-36 156.0 111 75.7
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.6e-35 152.9 111 73.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.8e-35 152.1 101 80.2
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.3e-34 149.1 123 63.4
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 4.0e-34 148.3 96 78.1
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.2e-34 147.9 85 85.9
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.6e-33 145.6 92 78.3
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.4e-33 145.2 107 73.8
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.6e-30 136.3 94 85.1
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.3e-29 133.3 100 67.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-29 131.0 85 83.5
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 4.7e-27 124.8 111 60.4
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 4.0e-26 121.7 77 79.2
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 4.0e-26 121.7 77 79.2
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 5.2e-26 121.3 107 59.8
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.1e-23 113.6 67 82.1
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.4e-23 113.2 70 78.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.9e-23 112.8 69 79.7
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 3.2e-23 112.1 68 80.9
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 4.6e-22 108.2 64 78.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-21 106.7 69 78.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.3e-21 105.9 98 54.1
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 6.2e-19 97.8 117 55.6
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.9e-18 94.4 74 70.3
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 7.6e-17 90.9 56 78.6
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.8e-16 88.6 73 65.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 6.4e-16 87.8 85 58.8
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.1e-15 87.0 57 73.7
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.2e-15 85.5 87 56.3
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 9.3e-15 84.0 68 67.6
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.9e-13 78.6 103 43.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 5.1e-13 78.2 114 42.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 4.3e-12 75.1 75 61.3
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.6e-11 73.2 63 65.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-11 72.8 82 53.7
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 4.8e-11 71.6 59 57.6
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.4e-10 70.1 53 64.2
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.4e-10 70.1 48 81.2
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 5.8e-09 64.7 122 35.2
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 9.9e-09 63.9 67 58.2
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.3e-08 63.5 44 72.7
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.2e-08 62.8 74 51.4
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.4e-08 60.8 38 78.9
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 3.5e-06 55.5 44 61.4
Sabra14G0106600 Salix brachista HOM05D001997 ORTHO05D005560 3.5e-06 55.5 49 67.3
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 4.6e-06 55.1 46 65.2
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 7.9e-06 54.3 31 80.6


User provided reference genes

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