Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 4.0e-41 171.0 88 100.0
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 3.7e-34 147.9 88 85.2
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 3.7e-34 147.9 88 85.2
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 5.3e-33 144.1 88 81.8
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 7.6e-32 140.2 89 82.0
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 9.9e-32 139.8 88 79.5
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 1.3e-31 139.4 88 76.1
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 1.1e-30 136.3 88 75.0
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 2.5e-30 135.2 88 78.4
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 3.2e-30 134.8 88 76.1
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 4.2e-30 134.4 88 75.0
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 5.5e-30 134.0 89 79.8
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 7.1e-30 133.7 84 75.0
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 75.0
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 77.3
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 72.7
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 7.1e-30 133.7 88 78.4
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 9.3e-30 133.3 88 75.0
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 1.6e-29 132.5 89 76.4
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 1.6e-29 132.5 88 73.9
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 1.0e-28 129.8 84 71.4
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 1.8e-28 129.0 88 73.9
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 6.7e-28 127.1 87 72.4
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 1.1e-27 126.3 88 71.6
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 1.1e-27 126.3 88 70.5
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 1.9e-27 125.6 90 70.0
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 2.5e-27 125.2 88 68.2
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 3.3e-27 124.8 88 69.3
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 3.3e-27 124.8 88 69.3
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 3.3e-27 124.8 88 68.2
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 4.3e-27 124.4 88 71.6
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 5.6e-27 124.0 87 69.0
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 1.3e-26 122.9 88 68.2
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 4.8e-26 120.9 79 74.7
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 1.1e-25 119.8 77 75.3
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 1.4e-25 119.4 81 72.8
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 1.8e-25 119.0 81 72.8
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 6.9e-25 117.1 101 62.4
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 5.8e-24 114.0 81 70.4
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 1.0e-23 113.2 79 78.5
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 1.0e-23 113.2 103 65.0
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 2.9e-23 111.7 81 69.1
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 3.8e-23 111.3 81 71.6
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 8.4e-23 110.2 81 66.7
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 1.1e-22 109.8 81 64.2
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 4.2e-22 107.8 88 59.1
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 7.1e-22 107.1 88 56.8
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 7.1e-22 107.1 80 65.0
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 1.6e-21 105.9 88 58.0
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 1.6e-21 105.9 82 63.4
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 1.6e-21 105.9 89 57.3
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 1.6e-21 105.9 89 57.3
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 1.6e-21 105.9 88 55.7
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 2.7e-21 105.1 88 58.0
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 6.1e-21 104.0 88 54.5
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 7.9e-21 103.6 85 55.3
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 1.3e-20 102.8 90 54.4
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 2.3e-20 102.1 88 54.5
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 3.0e-20 101.7 87 59.8
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 3.9e-20 101.3 89 55.1
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 1.1e-19 99.8 84 53.6
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 7.4e-19 97.1 129 45.0
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 9.7e-19 96.7 79 58.2
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 2.8e-18 95.1 69 68.1
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 8.2e-18 93.6 117 47.0
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 4.1e-17 91.3 84 51.2
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 5.3e-17 90.9 84 51.2
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 3.4e-16 88.2 86 43.0
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 5.9e-16 87.4 80 63.8
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 2.7e-13 78.6 89 48.3
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 3.0e-12 75.1 48 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1824 Anthoceros agrestis HOM05D008013 ORTHO05D010149 1.1e-11 73.2 80 46.2
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 3.3e-11 71.6 42 78.6
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 8.2e-10 67.0 50 64.0
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 1.8e-09 65.9 49 59.2
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 4.1e-09 64.7 48 66.7
Mapoly0013s0068 Marchantia polymorpha HOM05D008013 ORTHO05D010149 5.3e-09 64.3 82 40.2
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 1.2e-08 63.2 50 64.0
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 3.8e-07 58.2 63 46.0
SalBow3G2297 Salvia bowleyana HOM05D000837 ORTHO05D008386 5.5e-06 54.3 36 72.2
SalBow3G2750 Salvia bowleyana HOM05D000837 ORTHO05D008386 5.5e-06 54.3 36 72.2


User provided reference genes

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