Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 5.1e-125 451.1 223 100.0
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 1.8e-93 346.3 223 76.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.3e-93 345.9 223 76.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.0e-93 345.5 223 75.8
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 5.2e-93 344.7 224 75.9
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.4e-92 341.7 223 76.2
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.1e-90 337.0 223 72.6
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 3.1e-90 335.5 223 72.6
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 5.9e-89 331.3 222 72.1
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.0e-88 330.5 223 71.3
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.3e-88 330.1 223 70.0
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.3e-88 330.1 221 71.5
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.0e-88 328.2 223 69.5
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 4.2e-87 325.1 224 71.9
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 7.2e-87 324.3 201 79.6
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.2e-86 323.6 197 79.2
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 4.7e-86 321.6 223 72.6
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 3.0e-85 318.9 211 75.4
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 4.0e-85 318.5 208 73.1
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 5.2e-85 318.2 230 69.1
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 8.8e-85 317.4 197 79.7
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 8.8e-85 317.4 197 76.1
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 8.8e-85 317.4 197 77.7
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 8.8e-85 317.4 234 65.4
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 1.2e-84 317.0 197 74.1
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.0e-84 316.2 223 68.6
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 3.4e-84 315.5 225 70.7
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 4.4e-84 315.1 197 74.1
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.8e-84 313.9 197 75.6
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 9.8e-84 313.9 197 75.6
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 9.8e-84 313.9 197 75.6
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.3e-83 313.5 199 72.9
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.7e-83 313.2 195 74.9
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 4.8e-83 311.6 197 76.6
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 4.8e-83 311.6 197 74.6
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 8.3e-83 310.8 197 76.1
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 8.3e-83 310.8 199 75.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 4.1e-82 308.5 243 64.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.0e-81 306.2 197 73.6
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 3.5e-81 305.4 200 73.0
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.5e-81 305.1 223 68.6
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.5e-81 305.1 197 75.6
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 5.9e-81 304.7 197 72.1
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 5.9e-81 304.7 223 66.8
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 5.9e-81 304.7 243 63.8
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 7.7e-81 304.3 189 77.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.2e-80 302.8 197 73.6
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.9e-80 302.4 212 71.2
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 3.8e-80 302.0 183 79.8
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 5.0e-80 301.6 197 73.6
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.1e-79 300.4 197 74.1
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.1e-79 300.4 197 72.6
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.5e-79 300.1 197 71.6
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.9e-79 299.7 197 71.1
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 2.5e-79 299.3 195 71.3
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.2e-79 298.9 216 68.5
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.2e-79 298.9 197 71.1
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 4.2e-79 298.5 224 66.1
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.5e-79 298.1 223 67.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 5.5e-79 298.1 197 73.1
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 9.4e-79 297.4 232 66.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 9.4e-79 297.4 197 73.6
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 9.4e-79 297.4 197 71.1
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.2e-78 297.0 197 73.1
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.6e-78 296.6 197 72.6
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 3.6e-78 295.4 197 71.6
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 3.6e-78 295.4 197 72.1
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 4.7e-78 295.0 197 72.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.4e-77 293.5 196 73.0
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.4e-77 293.5 197 66.5
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.4e-77 293.5 193 73.1
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 1.4e-77 293.5 195 71.8
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.0e-77 292.4 215 68.4
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 3.0e-77 292.4 197 71.6
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.2e-77 291.6 183 75.4
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 6.8e-77 291.2 197 70.6
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 8.8e-77 290.8 196 67.3
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.2e-76 290.4 193 71.0
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.0e-76 289.7 197 72.1
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.0e-76 289.7 196 71.9
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.0e-76 289.7 197 71.1
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.6e-76 289.3 224 63.8
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.4e-76 288.9 197 71.6
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 3.4e-76 288.9 197 72.1
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-75 287.0 197 68.0
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.7e-75 286.6 197 70.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.4e-74 283.5 198 71.2
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.4e-74 283.5 197 70.6
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.1e-74 282.3 194 66.0
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 3.1e-74 282.3 197 69.5
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 3.1e-74 282.3 183 73.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 5.4e-74 281.6 186 74.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 7.0e-74 281.2 197 67.5
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 9.2e-74 280.8 196 66.8
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.2e-73 280.4 197 69.0
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.2e-73 280.4 197 69.5
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.6e-73 280.0 195 67.2
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.0e-73 279.6 189 70.9
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.7e-73 279.3 195 67.7
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 3.5e-73 278.9 199 66.3
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.0e-72 277.3 197 66.5
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.3e-72 276.9 194 71.1
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.3e-72 276.9 184 70.1
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 6.6e-72 274.6 184 70.1
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 6.6e-72 274.6 184 70.1
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 8.6e-72 274.2 186 72.0
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.5e-71 272.7 204 63.7
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 4.3e-71 271.9 183 72.7
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.2e-70 270.4 191 70.7
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.6e-70 270.0 186 71.0
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.8e-70 269.2 197 61.4
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.2e-68 263.8 195 67.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 5.7e-68 261.5 197 64.5
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.7e-68 261.5 177 69.5
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.8e-66 256.5 196 65.3
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 2.0e-65 253.1 206 61.2
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 2.0e-65 253.1 187 63.1
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.3e-64 250.4 183 67.2
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 3.9e-64 248.8 196 60.7
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.1e-63 247.3 163 73.0
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.2e-62 243.8 223 58.3
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.8e-60 235.0 180 62.8
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.7e-59 233.4 154 74.0
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.4e-58 230.3 143 75.5
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 2.3e-56 223.0 144 73.6
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.1e-55 220.7 187 57.2
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.9e-55 219.9 144 66.7
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 4.4e-52 208.8 144 64.6
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 5.8e-52 208.4 192 51.6
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 9.8e-52 207.6 156 61.5
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 3.3e-47 192.6 181 48.6
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.6e-46 190.3 114 75.4
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.8e-45 186.8 197 53.8
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 3.4e-44 182.6 125 68.8
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 2.2e-43 179.9 198 48.0
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 3.5e-41 172.6 98 79.6
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.7e-33 146.4 181 42.5
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 8.7e-32 141.4 178 42.1
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.5e-28 130.6 183 43.7
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 7.1e-26 121.7 61 96.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.6e-22 110.5 106 51.9
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 6.2e-22 108.6 74 63.5
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 6.9e-21 105.1 105 49.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.2e-20 104.4 137 43.1
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.6e-20 103.2 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 4.5e-20 102.4 104 50.0
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 2.9e-19 99.8 186 33.3
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.4e-18 97.4 193 36.3
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.4e-18 97.4 88 54.5
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 7.9e-17 91.7 71 56.3
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.8e-14 83.2 58 70.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.1e-13 79.7 57 70.2
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 6.3e-06 55.5 39 66.7
Cre03.g145427 Chlamydomonas reinhardtii HOM05D037009 ORTHO05D034383 8.2e-06 55.1 108 29.6


User provided reference genes

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