Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 0.0e+00 1207.2 611 100.0
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 1.9e-270 935.6 576 83.7
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.0e-256 889.0 632 75.2
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.3e-251 871.7 623 74.3
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.8e-250 867.8 616 74.8
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.8e-244 849.4 619 71.9
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 3.2e-238 828.6 614 72.0
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 7.2e-238 827.4 594 73.6
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 4.4e-235 818.1 628 70.2
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.3e-234 816.6 611 72.5
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 8.2e-234 813.9 621 70.5
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 1.4e-233 813.1 649 70.4
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 3.1e-233 812.0 634 69.4
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-232 810.1 575 75.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.9e-232 807.7 617 70.0
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.5e-230 803.1 583 71.7
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 5.5e-230 801.2 603 72.3
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 6.1e-229 797.7 563 76.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.0e-228 797.0 558 74.9
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 2.3e-228 795.8 612 69.4
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 4.0e-228 795.0 620 68.7
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.6e-227 792.3 611 70.4
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 3.3e-227 792.0 556 75.5
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 3.7e-226 788.5 627 67.6
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.1e-225 785.0 611 68.6
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 5.3e-225 784.6 612 68.1
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.6e-224 783.1 539 75.1
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.6e-224 783.1 635 67.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 4.5e-224 781.6 629 67.6
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 3.6e-221 771.9 615 67.8
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.0e-220 770.4 623 66.5
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.8e-220 769.6 618 67.8
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.0e-220 768.8 627 67.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.0e-220 768.5 614 67.9
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 5.2e-220 768.1 628 67.4
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 6.8e-220 767.7 614 68.2
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 2.6e-219 765.8 614 67.8
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.4e-219 765.0 616 68.2
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 9.8e-219 763.8 616 66.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.3e-218 763.5 616 67.9
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.7e-218 763.1 529 75.2
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 2.2e-218 762.7 614 69.5
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.2e-218 762.7 623 66.3
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 8.3e-218 760.8 554 72.0
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.4e-217 759.2 618 66.3
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 5.4e-217 758.1 614 68.6
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 7.0e-217 757.7 413 89.3
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.0e-217 757.7 637 65.1
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.2e-216 756.9 618 65.7
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 4.5e-216 755.0 615 67.2
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 4.5e-216 755.0 615 67.6
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 4.5e-216 755.0 615 68.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.9e-215 752.3 614 65.5
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.1e-214 750.4 625 68.8
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 9.5e-214 747.3 615 68.1
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.2e-213 746.9 518 74.3
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 4.7e-213 745.0 618 66.5
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.4e-212 743.4 616 65.1
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.8e-212 743.0 616 64.4
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 7.5e-211 737.6 454 80.6
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 9.8e-211 737.3 616 64.1
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.7e-210 736.5 563 70.9
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.8e-210 735.7 612 66.2
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 6.3e-210 734.6 618 64.9
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 2.4e-209 732.6 628 66.7
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 5.4e-209 731.5 634 64.5
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.2e-208 730.3 620 66.3
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 2.7e-208 729.2 601 64.2
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 5.9e-208 728.0 613 64.9
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 5.0e-207 724.9 456 79.8
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.1e-206 723.8 545 69.4
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.9e-206 723.0 626 64.5
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 2.5e-206 722.6 626 63.4
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.8e-205 719.2 536 70.7
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 2.8e-205 719.2 445 81.3
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.2e-203 713.8 604 64.4
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.2e-203 713.8 626 62.8
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.2e-203 713.8 617 64.7
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.2e-203 713.8 627 61.9
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.4e-203 712.2 619 64.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.4e-203 711.8 620 64.4
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 7.5e-203 711.1 623 65.3
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 7.5e-203 711.1 616 63.3
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.9e-202 709.1 612 65.0
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 6.4e-202 708.0 621 64.1
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 1.4e-201 706.8 458 77.5
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 1.2e-200 703.7 619 63.8
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.2e-200 703.7 619 61.9
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 3.5e-200 702.2 633 62.2
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 6.0e-200 701.4 625 62.7
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 7.8e-200 701.0 614 63.0
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.3e-199 700.3 491 72.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 3.9e-199 698.7 636 60.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 8.6e-199 697.6 565 67.1
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.5e-198 696.8 614 62.2
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.5e-198 696.8 543 68.5
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.9e-198 696.4 605 63.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 2.5e-198 696.0 633 61.8
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 4.3e-198 695.3 410 83.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 4.3e-198 695.3 618 62.9
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 7.3e-198 694.5 415 81.4
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 9.5e-198 694.1 613 62.2
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 9.5e-198 694.1 613 62.0
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-197 692.6 580 63.8
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.8e-197 692.6 533 67.2
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 3.6e-197 692.2 412 83.5
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.4e-196 690.3 593 62.9
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 3.1e-196 689.1 436 78.2
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 8.9e-196 687.6 593 62.7
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.2e-195 687.2 405 83.0
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.2e-195 687.2 412 81.8
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.6e-195 686.0 496 70.0
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 4.1e-193 678.7 580 62.9
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 9.2e-193 677.6 619 59.8
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 6.0e-192 674.9 610 63.9
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 6.0e-192 674.9 413 80.4
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.0e-191 674.1 619 61.2
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.0e-191 674.1 619 61.2
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.0e-191 674.1 619 61.2
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.3e-191 673.7 481 72.8
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 8.6e-191 671.0 620 60.3
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 8.6e-191 671.0 620 60.3
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.5e-190 669.5 519 67.6
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 5.6e-190 668.3 619 59.5
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 3.6e-189 665.6 572 64.0
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 8.1e-189 664.5 409 80.4
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.8e-188 663.3 626 60.1
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 9.9e-187 657.5 411 78.3
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-186 656.8 438 75.1
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.4e-185 652.9 405 79.8
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 3.2e-185 652.5 632 60.4
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.1e-185 651.4 362 88.4
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 4.0e-180 635.6 445 72.8
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 3.8e-178 629.0 358 84.4
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.8e-172 610.1 619 58.0
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 5.4e-169 598.6 365 78.9
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 5.1e-151 538.9 448 62.7
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.8e-149 532.3 377 72.1
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.0e-147 526.9 356 71.1
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.0e-143 514.6 411 64.2
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.0e-143 514.6 407 64.1
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 2.8e-133 479.9 351 68.1
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 2.4e-132 476.9 305 74.1
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.7e-109 401.0 399 60.9
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 2.0e-102 377.5 209 85.2
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 2.5e-97 360.5 405 48.9
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-96 357.1 197 85.3
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 7.5e-86 322.4 180 83.9
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.3e-79 300.8 159 87.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.0e-79 300.1 156 89.1
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 4.0e-79 300.1 156 89.1
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 2.3e-74 284.3 285 56.1
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 7.8e-67 259.2 356 44.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.4e-63 248.4 363 38.8
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.3e-57 226.9 137 82.5
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.3e-50 205.3 128 82.0
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.3e-50 204.5 182 54.4
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 7.6e-46 189.5 268 38.8
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 1.3e-45 188.7 186 54.8
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 9.3e-44 182.6 109 80.7
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 6.5e-37 159.8 156 55.1
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 3.2e-36 157.5 97 78.4
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.5e-35 154.1 88 80.7
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.3e-34 152.1 110 65.5
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-32 144.4 83 78.3
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 6.9e-31 139.8 83 74.7
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 9.0e-31 139.4 258 32.9
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 1.2e-30 139.0 127 56.7
Dinv20970 Davidia involucrata HOM05D064623 ORTHO05D179594 1.5e-30 138.7 104 74.0
Dinv21035 Davidia involucrata HOM05D064623 ORTHO05D181186 1.5e-30 138.7 104 74.0
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 9.3e-28 129.4 254 39.8
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.4e-23 114.8 121 53.7
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 3.1e-23 114.4 98 62.2
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 2.0e-22 111.7 150 48.0
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.2e-19 102.4 90 61.1
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 4.5e-14 84.0 175 34.3
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 6.5e-13 80.1 111 44.1
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 1.1e-12 79.3 41 95.1
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 2.5e-12 78.2 110 45.5
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 7.0e-07 60.1 32 81.2


User provided reference genes

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