Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 3839.3 1974 100.0
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 3690.2 1872 99.1
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2679.4 1991 70.9
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2661.3 1822 74.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2615.5 1967 69.0
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2578.5 1883 70.8
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2570.0 1963 68.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2556.2 2042 66.2
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2533.8 1850 71.2
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2522.3 1955 68.2
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2484.9 1872 68.7
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2462.6 1944 66.1
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2447.2 1894 67.4
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2444.1 1876 68.1
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2441.0 1968 64.3
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2436.0 1835 68.9
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2432.1 1887 68.0
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2399.0 1886 66.6
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2392.1 1881 66.8
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2389.4 1961 64.9
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2380.9 1866 67.0
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2374.0 1947 64.9
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2363.6 1884 65.1
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2352.0 1884 65.2
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2341.2 1967 63.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2337.0 1847 66.1
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2333.5 1879 64.8
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2312.0 1875 64.9
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2305.8 1883 64.0
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2274.6 1866 64.3
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2265.3 1821 65.5
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2259.6 1876 63.2
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2250.7 1783 66.1
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2248.4 1877 62.6
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2246.1 1883 62.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2239.5 1877 63.1
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2237.6 1928 62.0
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2236.8 1854 63.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2236.1 1879 62.6
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2230.7 1867 62.0
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2226.4 1873 62.7
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2226.1 1963 60.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2218.0 1888 62.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2215.7 1867 62.3
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2214.9 1917 61.1
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2212.6 1871 62.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2203.7 1848 62.5
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2195.2 1879 61.7
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2190.2 1880 61.5
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2176.7 2040 58.5
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2176.7 1944 60.4
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2171.7 1850 61.9
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2155.9 1872 62.0
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2146.7 2028 59.3
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2140.5 1951 60.2
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2139.4 1871 60.8
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2135.9 1985 58.1
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2133.6 1950 59.5
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2130.1 1879 61.0
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2111.6 1918 59.6
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2108.2 1885 60.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2104.7 1893 60.5
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2103.9 2013 57.7
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2096.2 1993 58.0
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2087.0 1876 60.3
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2061.6 2008 56.0
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2029.2 1879 57.9
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2029.2 1951 57.3
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2024.6 1956 57.2
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1994.5 1859 58.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1980.7 1870 57.2
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1980.7 1828 58.4
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1977.2 1869 57.8
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1957.2 1827 57.7
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1954.1 1857 57.5
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1946.0 1868 56.9
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1939.9 1858 57.2
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1926.8 1889 56.4
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1926.4 1890 56.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1920.6 1823 56.6
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1912.1 1848 56.2
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1823.5 2032 51.1
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1795.8 1176 78.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1778.5 1473 63.9
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1772.7 1611 58.8
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1562.7 1845 49.7
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1526.1 1256 64.8
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1505.3 1725 49.0
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1251.5 794 79.8
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1218.0 2099 38.5
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1186.8 1884 39.3
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1147.1 2112 36.3
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 9.9e-305 1051.2 2027 35.2
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.5e-300 1037.3 800 69.4
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 8.4e-280 968.4 792 64.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 3.7e-243 846.7 689 64.0
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.9e-239 834.3 1162 42.9
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 9.8e-236 822.0 1325 40.8
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.0e-229 802.0 2039 30.7
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 5.6e-215 753.1 739 55.9
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 9.9e-188 662.5 722 51.7
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 2.3e-168 598.2 702 50.6
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 1.0e-160 572.8 417 68.6
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 3.1e-149 534.6 359 72.7
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.3e-107 396.4 501 49.3
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 5.4e-93 347.8 217 78.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-88 333.6 196 84.7
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 5.3e-72 278.1 225 63.1
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 9.6e-66 257.3 311 47.9
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 2.2e-62 246.1 273 48.4
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 2.2e-62 246.1 317 49.2
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.9e-43 182.2 246 45.9
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.2e-39 170.6 227 43.2
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.4e-34 151.4 127 57.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 1.5e-31 143.7 135 54.8
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 2.1e-28 133.3 78 83.3
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 2.5e-21 109.8 475 26.1
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 4.2e-21 109.0 156 43.6
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 8.0e-20 104.8 120 54.2
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.8e-17 95.5 68 64.7
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.2e-14 86.7 69 58.0
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.4e-11 77.4 72 52.8
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.2e-09 70.1 98 37.8
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.2e-09 70.1 316 27.5
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.3e-09 68.6 48 70.8
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 2.0e-07 63.5 71 52.1
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 6.5e-06 58.5 93 41.9


User provided reference genes

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