Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1381.3 695 100.0
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1213.0 775 82.6
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 1195.3 811 76.7
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 1193.3 811 76.7
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 1179.5 810 76.2
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 1172.9 811 74.7
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 1172.1 810 75.2
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 1171.0 810 75.2
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1166.0 810 74.9
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1164.4 810 74.6
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 1161.7 809 74.3
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 1160.2 811 73.7
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 1159.1 811 74.7
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 1156.7 812 73.9
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 1148.3 811 73.2
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 1146.7 811 72.9
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 1145.6 811 73.7
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1144.8 808 72.5
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 1144.8 811 73.2
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 1143.6 811 73.0
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1143.3 808 72.5
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1143.3 808 72.5
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 1143.3 811 73.1
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 1142.9 811 73.2
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 1140.2 812 72.4
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1139.0 811 72.4
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 1139.0 811 72.0
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 1136.7 809 71.8
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 1136.3 811 73.1
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 1135.9 809 72.6
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 1135.2 804 72.9
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 1135.2 809 72.3
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 1134.8 811 72.6
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 1134.4 811 71.8
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1132.5 810 72.6
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 1130.9 810 72.0
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 1130.5 811 71.4
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 1128.2 808 71.4
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 1128.2 808 71.8
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 1127.9 808 71.8
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 1127.1 809 71.8
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 1125.5 814 71.5
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 1125.2 811 70.4
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1124.8 812 70.9
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 1124.4 809 72.1
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 1123.6 804 72.3
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1122.8 806 72.2
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 1122.5 809 71.7
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 1122.1 811 72.3
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 1120.9 808 71.2
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 1120.9 808 71.2
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 1120.9 806 72.3
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 1120.1 808 71.0
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 1120.1 808 71.8
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 1119.4 808 71.4
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 1119.0 808 70.9
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 1119.0 809 71.3
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 1118.6 812 70.7
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 1117.8 809 71.1
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 1117.1 808 71.2
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 1116.3 808 71.2
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 1114.8 811 71.4
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 1114.4 806 71.6
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 1112.8 811 70.4
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 1112.8 812 69.8
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 1111.3 811 71.4
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 1110.9 809 70.3
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 1110.5 811 70.2
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 1110.5 804 71.1
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 1110.1 806 71.6
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 1110.1 809 71.0
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1108.6 811 69.5
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1108.2 806 71.5
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1108.2 806 71.5
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1104.7 806 71.2
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 1103.2 812 69.5
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 1102.4 812 69.5
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 1102.0 810 69.8
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 1101.3 813 69.6
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 1100.5 810 71.1
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 1100.1 810 69.6
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 1098.2 810 70.0
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 1097.4 809 69.6
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1094.7 812 69.1
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1092.0 808 69.7
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 1088.2 813 69.1
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 1088.2 797 71.5
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 1085.5 809 68.6
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 9.5e-312 1073.2 807 69.1
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 2.4e-311 1071.6 815 69.0
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 7.1e-311 1070.1 810 68.4
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 8.9e-309 1063.1 812 67.4
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 1.3e-307 1059.3 820 67.0
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 5.4e-306 1053.9 787 69.5
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 3.3e-303 1044.6 807 66.5
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 4.3e-303 1044.3 806 67.6
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 6.8e-301 1036.9 807 66.9
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 2.0e-284 982.2 801 63.0
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 1.9e-282 975.7 814 62.5
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 6.6e-280 967.2 764 67.9
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 1.5e-268 929.5 813 59.2
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 1.7e-267 926.0 749 64.8
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 7.8e-265 917.1 803 59.9
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 1.4e-258 896.3 804 58.3
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 2.1e-246 855.9 730 63.3
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 1.4e-245 853.2 612 71.1
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 1.2e-241 840.1 762 60.8
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.6e-212 742.7 502 76.5
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 9.4e-210 734.2 855 50.1
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 3.1e-205 719.2 596 63.8
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 4.7e-201 705.3 477 72.7
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 6.4e-190 668.3 743 54.6
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 5.0e-179 632.1 580 57.8
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-173 613.6 583 55.2
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 5.4e-173 612.1 839 44.0
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 1.3e-171 607.4 898 42.5
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.8e-142 509.6 389 71.2
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 6.0e-140 502.3 357 72.8
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 5.0e-118 429.5 300 73.7
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 4.5e-103 379.8 751 34.1
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 6.1e-92 342.8 270 67.8
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 8.3e-81 305.8 200 78.5
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 9.2e-56 222.6 114 98.2
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.3e-54 218.8 169 66.3
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 4.3e-53 213.8 169 65.7
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 5.6e-53 213.4 169 65.1
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 8.9e-51 206.1 239 51.5
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 1.1e-45 189.1 185 57.3
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.6e-39 168.7 91 87.9
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 2.5e-29 134.8 138 56.5
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 1.6e-28 132.1 132 54.5
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 2.0e-26 125.2 124 54.0
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 3.9e-22 110.9 71 78.9


User provided reference genes

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