Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 9.3e-273 943.0 482 100.0
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 8.9e-199 697.2 501 72.5
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.5e-193 679.9 505 72.9
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 2.8e-184 649.0 513 67.1
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 1.5e-182 643.3 479 70.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 6.4e-181 637.9 501 68.5
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.7e-178 629.8 518 64.5
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 4.0e-175 618.6 499 67.7
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 5.8e-174 614.8 488 67.4
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.4e-172 610.1 505 63.8
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.5e-169 599.4 501 62.9
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.6e-168 595.5 502 64.1
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.8e-167 593.2 504 61.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 9.9e-166 587.4 501 64.3
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 4.9e-165 585.1 501 63.5
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.9e-164 583.2 494 62.3
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 4.2e-164 582.0 504 62.5
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 7.1e-164 581.3 501 62.7
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.2e-163 580.5 504 61.9
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.0e-163 578.2 501 62.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 5.1e-162 575.1 461 65.3
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.5e-161 573.5 501 60.9
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.9e-161 573.2 504 61.3
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 5.6e-161 571.6 442 66.5
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 9.6e-161 570.9 501 62.7
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.2e-160 570.5 507 60.7
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.1e-160 569.7 504 61.1
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 2.8e-160 569.3 500 61.0
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 3.6e-160 568.9 504 61.1
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 4.7e-160 568.5 510 61.2
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.1e-159 567.4 504 60.9
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.1e-159 567.4 501 62.5
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 4.0e-159 565.5 498 61.0
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 9.0e-159 564.3 504 60.7
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.5e-158 563.5 501 62.1
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 5.8e-158 561.6 506 60.1
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.7e-157 560.1 477 64.8
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.7e-157 560.1 588 53.2
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.7e-157 560.1 498 60.8
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.2e-156 555.4 502 61.8
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.2e-155 553.9 500 60.8
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 2.1e-155 553.1 508 59.3
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 6.6e-154 548.1 500 59.4
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 3.3e-153 545.8 500 61.0
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 5.6e-153 545.0 450 62.4
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.1e-151 540.8 500 60.4
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.9e-151 538.1 501 60.7
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 2.6e-150 536.2 504 58.1
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 5.8e-150 535.0 471 59.4
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.7e-149 533.5 450 61.6
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.2e-149 533.1 502 58.8
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 2.9e-149 532.7 513 57.1
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.4e-148 529.6 500 59.4
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 7.1e-148 528.1 514 57.6
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 9.3e-148 527.7 501 59.3
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.6e-147 526.9 512 56.8
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 7.9e-147 524.6 502 58.0
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 7.9e-147 524.6 499 57.5
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.1e-145 520.8 451 60.8
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 3.3e-145 519.2 497 57.7
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.3e-145 518.8 451 60.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 6.2e-144 515.0 497 56.1
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.1e-143 514.2 510 55.3
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 3.1e-143 512.7 463 59.4
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.0e-143 512.3 510 56.5
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.3e-141 507.3 483 55.9
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.2e-141 506.5 430 61.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 2.9e-141 506.1 486 57.6
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.8e-141 505.8 515 54.2
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.9e-141 505.4 500 55.4
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 3.2e-140 502.7 519 54.1
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.3e-136 490.7 480 57.1
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.2e-136 488.4 453 58.7
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 2.4e-135 486.5 508 54.5
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 3.1e-135 486.1 501 54.3
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.5e-134 483.8 453 58.3
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 2.0e-134 483.4 458 58.5
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 2.6e-134 483.0 488 53.9
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.4e-132 477.2 474 56.1
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 5.5e-132 475.3 444 59.0
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.1e-131 473.4 482 55.2
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 3.5e-131 472.6 463 55.7
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 8.7e-130 468.0 510 52.7
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 8.7e-130 468.0 510 52.7
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.1e-129 467.6 452 56.2
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 4.1e-127 459.1 501 51.7
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 9.0e-127 458.0 496 52.2
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.5e-126 457.2 512 51.0
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 4.5e-126 455.7 397 63.0
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 5.9e-126 455.3 501 52.1
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.9e-126 455.3 497 52.1
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.0e-125 454.5 511 51.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.2e-125 453.4 489 52.6
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 2.5e-124 449.9 511 50.5
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.2e-124 449.1 506 51.6
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.6e-123 445.7 505 50.3
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 2.3e-122 443.4 509 51.1
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 2.3e-122 443.4 502 49.6
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 3.0e-122 443.0 445 54.6
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 3.0e-122 443.0 487 51.5
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 5.1e-122 442.2 426 58.0
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 8.8e-122 441.4 453 54.1
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.8e-122 441.4 505 50.1
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.0e-121 440.3 224 95.5
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.5e-121 439.9 511 49.7
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.3e-120 437.6 512 50.6
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 2.2e-120 436.8 468 52.8
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 2.4e-119 433.3 396 59.3
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.2e-118 431.0 497 50.3
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.3e-117 427.6 497 49.9
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 6.5e-117 425.2 473 51.2
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.9e-116 423.7 454 52.6
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 5.5e-116 422.2 489 49.3
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 4.7e-115 419.1 508 48.0
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 5.1e-114 415.6 466 51.3
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 7.0e-111 405.2 504 46.4
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-107 394.4 393 55.2
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.7e-107 393.3 416 55.8
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.1e-105 387.9 386 57.5
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 8.5e-101 371.7 460 49.3
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.4e-95 353.6 328 55.8
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 9.1e-95 351.7 316 57.6
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.0e-93 348.2 335 57.0
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.8e-93 346.3 362 55.0
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 8.8e-90 335.1 277 61.0
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.5e-86 322.8 487 43.7
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 2.3e-82 310.5 437 43.0
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.3e-74 283.9 503 36.8
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 4.0e-74 283.1 482 38.4
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 6.8e-74 282.3 222 61.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.0e-69 268.5 190 68.4
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.6e-62 244.6 315 48.9
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.1e-62 244.2 241 62.7
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 4.6e-62 243.0 298 46.6
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 6.4e-56 222.6 196 56.6
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 3.0e-53 213.8 333 39.0
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.5e-52 211.5 518 29.7
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.5e-36 157.5 124 64.5
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-35 154.8 127 61.4
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 6.7e-29 132.9 82 72.0
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.1e-27 127.9 129 56.6
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 3.7e-27 127.1 223 32.7
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.4e-26 125.2 100 59.0
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 5.5e-23 113.2 428 25.5
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 9.3e-23 112.5 84 61.9
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.1e-18 97.4 147 44.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 3.8e-16 90.5 173 32.9
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 9.3e-15 85.9 67 59.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.0e-13 82.4 64 59.4
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 3.0e-13 80.9 57 71.9
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 5.1e-13 80.1 64 57.8
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 3.4e-09 67.4 46 65.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 2.1e-06 58.2 168 28.0


User provided reference genes

Program Settings