Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.5e-161 572.8 289 100.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.8e-114 416.4 211 100.0
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 3.4e-12 76.6 55 67.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 5.8e-12 75.9 55 65.5
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 9.9e-12 75.1 55 65.5
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 9.9e-12 75.1 55 61.8
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 9.9e-12 75.1 55 67.3
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-11 74.7 45 73.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.7e-11 74.3 55 65.5
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.7e-11 74.3 52 67.3
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 1.7e-11 74.3 55 63.6
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.8e-11 73.2 45 73.3
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.8e-11 73.2 47 66.0
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.8e-11 73.2 47 66.0
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.9e-11 72.8 45 73.3
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.9e-11 72.8 55 60.0
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.9e-11 72.8 45 73.3
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 4.9e-11 72.8 45 73.3
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.4e-11 72.0 52 67.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 8.4e-11 72.0 45 71.1
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 8.4e-11 72.0 52 65.4
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.1e-10 71.6 45 71.1
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.1e-10 71.6 55 61.8
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.1e-10 71.6 55 60.0
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.1e-10 71.6 47 66.0
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.1e-10 71.6 55 61.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.1e-10 71.6 45 73.3
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 73.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 71.1
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 73.3
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 71.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 73.3
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 73.3
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.4e-10 71.2 45 73.3
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.9e-10 70.9 46 71.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.9e-10 70.9 56 60.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.9e-10 70.9 55 60.0
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.9e-10 70.9 45 73.3
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 2.4e-10 70.5 45 73.3
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.4e-10 70.5 45 73.3
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.4e-10 70.5 47 68.1
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.4e-10 70.5 52 63.5
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.4e-10 70.5 45 73.3
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.4e-10 70.5 55 58.2
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.2e-10 70.1 45 68.9
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.2e-10 70.1 45 68.9
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 3.2e-10 70.1 55 60.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.2e-10 70.1 45 71.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 3.2e-10 70.1 45 73.3
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.2e-10 69.7 45 68.9
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.2e-10 69.7 53 64.2
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 4.2e-10 69.7 45 71.1
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.2e-10 69.7 45 71.1
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 4.2e-10 69.7 55 58.2
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 5.4e-10 69.3 47 66.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 5.4e-10 69.3 55 60.0
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 5.4e-10 69.3 45 71.1
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.4e-10 69.3 53 64.2
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 7.1e-10 68.9 47 66.0
Dinv30644 Davidia involucrata HOM05D003864 ORTHO05D035062 7.1e-10 68.9 121 43.0
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 7.1e-10 68.9 55 58.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 7.1e-10 68.9 45 68.9
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 7.1e-10 68.9 45 68.9
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 7.1e-10 68.9 45 68.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 7.1e-10 68.9 55 58.2
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 9.3e-10 68.6 55 58.2
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 9.3e-10 68.6 55 60.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 9.3e-10 68.6 56 58.9
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.2e-09 68.2 55 58.2
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.2e-09 68.2 52 59.6
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.2e-09 68.2 53 60.4
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-09 68.2 55 56.4
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.6e-09 67.8 47 63.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-09 67.8 46 63.0
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.6e-09 67.8 45 68.9
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.6e-09 67.8 55 58.2
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.1e-09 67.4 45 68.9
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.1e-09 67.4 45 66.7
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 2.1e-09 67.4 57 59.6
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.7e-09 67.0 55 58.2
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-09 67.0 55 58.2
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-09 67.0 55 58.2
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-09 67.0 53 60.4
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.7e-09 67.0 47 66.0
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.7e-09 67.0 47 66.0
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.5e-09 66.6 55 52.7
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 3.5e-09 66.6 55 54.5
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 3.5e-09 66.6 55 58.2
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 3.5e-09 66.6 56 58.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 3.5e-09 66.6 55 56.4
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 3.5e-09 66.6 45 71.1
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 3.5e-09 66.6 45 71.1
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.6e-09 66.2 45 64.4
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 4.6e-09 66.2 45 66.7
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.6e-09 66.2 55 58.2
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 4.6e-09 66.2 45 62.2
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 6.0e-09 65.9 53 56.6
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.0e-09 65.9 45 66.7
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 7.8e-09 65.5 45 66.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 7.8e-09 65.5 55 58.2
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 7.8e-09 65.5 45 66.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.0e-08 65.1 55 56.4
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.0e-08 65.1 55 56.4
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.0e-08 65.1 53 56.6
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.0e-08 65.1 55 56.4
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.0e-08 65.1 55 54.5
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.0e-08 65.1 45 66.7
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.3e-08 64.7 45 64.4
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-08 64.3 45 62.2
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.7e-08 64.3 45 64.4
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.7e-08 64.3 45 62.2
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.7e-08 64.3 45 62.2
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.7e-08 64.3 45 62.2
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.3e-08 63.9 47 63.8
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 3.0e-08 63.5 55 52.7
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 3.0e-08 63.5 45 60.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.0e-08 63.5 47 53.2
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.9e-08 63.2 45 64.4
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 3.9e-08 63.2 45 62.2
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 5.1e-08 62.8 45 60.0
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.1e-08 62.8 45 60.0
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.6e-08 62.4 45 62.2
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 8.7e-08 62.0 45 60.0
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 8.7e-08 62.0 45 60.0
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 8.7e-08 62.0 45 60.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 8.7e-08 62.0 45 60.0
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 8.7e-08 62.0 52 57.7
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 1.1e-07 61.6 45 62.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.5e-07 61.2 45 60.0
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-07 60.8 45 60.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.9e-07 60.8 45 62.2
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.9e-07 60.8 45 60.0
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.5e-07 60.5 45 60.0
Dinv14086 Davidia involucrata HOM05D000096 ORTHO05D000045 2.5e-07 60.5 50 70.0
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 3.3e-07 60.1 52 55.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 4.3e-07 59.7 45 57.8
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 4.3e-07 59.7 47 51.1
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 4.3e-07 59.7 45 60.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 7.3e-07 58.9 45 57.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 2.1e-06 57.4 45 51.1
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.1e-06 57.4 45 57.8
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 8.1e-06 55.5 47 48.9
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 8.1e-06 55.5 45 53.3


User provided reference genes

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