Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-108 396.4 208 100.0
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.7e-72 275.8 143 100.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 7.7e-67 257.7 198 69.2
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.9e-66 255.8 200 69.5
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.6e-66 254.6 200 66.0
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.5e-65 252.7 216 62.0
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.9e-61 238.4 200 63.0
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 8.3e-61 237.7 203 62.1
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.1e-60 235.3 205 61.0
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 5.4e-60 235.0 200 62.5
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 9.2e-60 234.2 200 63.0
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.7e-59 232.6 179 64.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 4.5e-59 231.9 206 63.1
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 3.8e-58 228.8 205 59.5
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 7.3e-57 224.6 202 58.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 9.5e-57 224.2 201 62.2
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.1e-56 223.0 209 59.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.6e-56 222.2 209 58.9
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 4.7e-56 221.9 200 61.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 8.0e-56 221.1 206 61.7
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.0e-55 220.7 200 61.0
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.5e-54 216.9 205 58.5
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.5e-54 216.9 205 58.5
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.5e-54 216.9 199 59.8
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.4e-54 215.7 196 59.2
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 5.8e-54 214.9 210 56.7
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 9.8e-54 214.2 198 61.1
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.1e-52 208.8 205 58.0
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-51 206.5 222 56.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.5e-51 205.7 190 57.9
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.6e-51 205.3 197 56.9
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 4.6e-51 205.3 205 54.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.0e-50 204.1 204 53.4
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.3e-50 203.0 171 63.7
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.0e-50 201.8 267 48.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 6.6e-50 201.4 199 58.3
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-49 200.7 203 54.7
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.6e-49 198.4 201 54.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.2e-48 197.2 187 60.4
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.1e-47 192.6 215 52.6
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 8.9e-47 191.0 207 54.1
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-46 190.7 142 66.9
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-46 189.1 198 56.6
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.4e-46 189.1 155 63.9
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 4.4e-46 188.7 213 51.6
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.8e-46 188.3 114 81.6
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 2.9e-45 186.0 170 57.1
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.4e-45 184.9 186 57.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.4e-44 183.7 161 61.5
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.1e-44 182.2 193 52.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.0e-44 181.4 211 50.2
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 6.0e-43 178.3 227 47.6
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.8e-43 177.9 144 63.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.0e-42 177.6 177 52.5
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.0e-42 177.6 283 42.0
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.1e-42 175.3 177 52.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 5.1e-42 175.3 159 58.5
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.6e-42 174.9 204 50.5
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.9e-41 173.3 203 55.2
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 4.3e-41 172.2 177 51.4
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 9.5e-41 171.0 168 53.6
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.2e-40 170.6 142 61.3
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.6e-40 170.2 177 50.8
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.6e-40 169.1 156 61.5
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.1e-39 167.5 179 52.0
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.8e-39 166.8 134 60.4
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.8e-39 164.9 126 65.1
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 8.9e-39 164.5 177 50.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.2e-38 164.1 173 49.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.5e-38 163.7 173 49.1
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.2e-37 159.8 193 48.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.9e-37 159.5 193 48.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 4.1e-36 155.6 178 49.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.7e-35 152.9 90 81.1
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 6.0e-35 151.8 136 55.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 8.6e-34 147.9 212 42.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 4.3e-33 145.6 140 52.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.2e-31 138.7 199 42.7
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.5e-27 125.9 133 54.9
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.1e-24 114.8 134 54.5
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.4e-23 113.2 134 53.7
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 5.3e-23 112.1 154 39.6
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.3e-23 112.1 159 37.7
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 9.0e-23 111.3 150 38.7
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.4e-22 109.4 163 38.7
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.4e-22 109.0 163 33.7
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 9.9e-22 107.8 69 72.5
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.3e-21 107.5 148 39.9
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 3.8e-21 105.9 145 37.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.4e-21 105.1 153 41.2
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 6.4e-21 105.1 145 38.6
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 8.4e-21 104.8 178 36.0
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.1e-20 104.4 158 36.1
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.1e-20 104.4 157 36.9
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.1e-20 104.4 152 39.5
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.9e-20 103.6 113 42.5
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.9e-20 103.6 146 36.3
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.4e-20 103.2 115 42.6
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.2e-20 102.8 186 33.9
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 4.2e-20 102.4 139 33.1
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.2e-20 102.4 144 38.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.2e-20 102.4 148 39.2
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 4.2e-20 102.4 113 39.8
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 4.2e-20 102.4 146 38.4
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 4.2e-20 102.4 152 34.2
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 5.4e-20 102.1 84 67.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.4e-20 102.1 141 34.8
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 5.4e-20 102.1 123 52.0
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 7.1e-20 101.7 173 36.4
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 7.1e-20 101.7 188 34.0
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.3e-20 101.3 181 33.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.2e-19 100.9 157 35.7
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.6e-19 100.5 145 39.3
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.6e-19 100.5 113 45.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.1e-19 100.1 150 34.7
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.1e-19 100.1 141 38.3
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.1e-19 100.1 149 37.6
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.7e-19 99.8 147 38.1
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.5e-19 99.4 149 36.9
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.5e-19 99.4 170 31.2
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.5e-19 99.4 181 30.9
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 7.8e-19 98.2 141 36.2
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 7.8e-19 98.2 152 37.5
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.8e-19 98.2 115 41.7
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-18 97.4 151 35.1
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.7e-18 97.1 152 37.5
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.7e-18 97.1 154 35.1
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 3.0e-18 96.3 189 33.3
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 5.1e-18 95.5 208 30.8
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.1e-18 95.5 148 36.5
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 8.7e-18 94.7 150 34.0
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.7e-18 94.7 148 35.8
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.1e-17 94.4 149 32.9
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.1e-17 94.4 148 35.8
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.5e-17 94.0 111 36.0
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 2.5e-17 93.2 132 41.7
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.3e-17 92.8 224 29.0
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.3e-17 92.4 130 45.4
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.3e-17 92.4 157 33.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 5.6e-17 92.0 140 37.1
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.6e-17 92.0 71 64.8
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 7.3e-17 91.7 155 33.5
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 9.6e-17 91.3 113 34.5
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.8e-16 89.7 151 34.4
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 3.6e-16 89.4 116 40.5
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.8e-16 89.0 158 34.2
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 6.2e-16 88.6 113 38.1
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.2e-16 88.6 200 30.0
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 5.3e-15 85.5 239 28.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.4e-14 82.8 87 43.7
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 6.4e-13 78.6 146 33.6
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 8.4e-13 78.2 154 31.8
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 3.2e-12 76.3 121 36.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.6e-11 73.9 77 42.9
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.5e-11 72.8 115 34.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 3.5e-11 72.8 223 26.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 4.6e-11 72.4 115 34.8
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.7e-10 68.6 75 42.7
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.9e-09 67.0 143 32.2
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 2.5e-09 66.6 40 75.0
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.6e-09 65.5 113 31.9
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 7.4e-09 65.1 122 28.7
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.3e-08 64.3 63 54.0
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 6.2e-08 62.0 122 27.9


User provided reference genes

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