Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01798 Davidia involucrata HOM05D000470 ORTHO05D008418 2.6e-98 362.1 185 100.0
Hma1.2p1_2522F.1_g323840 Hydrangea macrophylla HOM05D000470 ORTHO05D000348 5.7e-21 105.1 86 65.1
CSS0001377 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 7.5e-21 104.8 86 69.8
Nn3g18938 Nelumbo nucifera HOM05D000470 ORTHO05D000348 1.3e-17 94.0 89 56.2
Nn2g15309 Nelumbo nucifera HOM05D000470 ORTHO05D000348 3.2e-16 89.4 58 70.7
TAR628G0588 Trochodendron aralioides HOM05D000470 ORTHO05D000348 9.4e-16 87.8 83 56.6
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 1.2e-15 87.4 89 57.3
Cpa.g.sc315.1 Carica papaya HOM05D000470 ORTHO05D022243 2.1e-15 86.7 64 64.1
vmacro01736 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 2.1e-15 86.7 56 73.2
Ciclev10001154m.g Citrus clementina HOM05D000470 ORTHO05D000348 5.2e-14 82.0 85 50.6
Manes.07G020300 Manihot esculenta HOM05D000470 ORTHO05D000348 5.2e-14 82.0 62 61.3
Lsat_1_v5_gn_7_79220 Lactuca sativa HOM05D000470 ORTHO05D000348 8.8e-14 81.3 58 65.5
HanXRQChr17g0551151 Helianthus annuus HOM05D000470 ORTHO05D000348 2.0e-13 80.1 71 56.3
Sp5g04000 Schrenkiella parvula HOM05D000470 ORTHO05D000348 2.0e-13 80.1 61 59.0
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 2.6e-13 79.7 45 88.9
Actinidia39018 Actinidia chinensis HOM05D001917 ORTHO05D002790 3.4e-13 79.3 51 72.5
Potri.006G081700 Populus trichocarpa HOM05D000470 ORTHO05D000348 3.4e-13 79.3 77 57.1
Rhsim11G0126500 Rhododendron simsii HOM05D000470 ORTHO05D000348 3.4e-13 79.3 51 72.5
vmacro19876 Vaccinium macrocarpon HOM05D000470 ORTHO05D000348 3.4e-13 79.3 93 46.2
Ah.01g005560 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.4e-13 79.0 60 63.3
CANSAT11G1501 Cannabis sativa HOM05D000470 ORTHO05D000348 4.4e-13 79.0 56 67.9
MD08G1238500 Malus domestica HOM05D000470 ORTHO05D000348 7.5e-13 78.2 70 58.6
Sc07g0005010 Simmondsia chinensis HOM05D000470 ORTHO05D000348 7.5e-13 78.2 88 51.1
BcaC07g40303 Brassica carinata HOM05D000470 ORTHO05D000348 9.8e-13 77.8 64 60.9
MD15G1430500 Malus domestica HOM05D000470 ORTHO05D000348 1.3e-12 77.4 56 64.3
Prupe.1G575700 Prunus persica HOM05D000470 ORTHO05D000348 1.3e-12 77.4 56 64.3
Aqoxy6G00066 Aquilegia oxysepala HOM05D000470 ORTHO05D000348 1.7e-12 77.0 56 64.3
AT3G58970 Arabidopsis thaliana HOM05D000470 ORTHO05D000348 1.7e-12 77.0 63 60.3
EL10Ac9g22037 Beta vulgaris HOM05D000470 ORTHO05D000348 1.7e-12 77.0 61 60.7
BcaC07g40232 Brassica carinata HOM05D000470 ORTHO05D000348 1.7e-12 77.0 59 61.0
DCAR_001830 Daucus carota HOM05D000470 ORTHO05D000348 2.2e-12 76.6 71 56.3
Thhalv10005994m.g Eutrema salsugineum HOM05D000470 ORTHO05D000348 2.2e-12 76.6 86 44.2
MBI03_g11144_MAGBIO Magnolia biondii HOM05D000470 ORTHO05D000348 2.2e-12 76.6 56 64.3
Medtr8g088670 Medicago truncatula HOM05D000470 ORTHO05D000348 2.2e-12 76.6 56 62.5
C08p34190 Brassica napus HOM05D000470 ORTHO05D000348 2.8e-12 76.3 58 60.3
BolC8t51016H Brassica oleracea HOM05D000470 ORTHO05D000348 2.8e-12 76.3 58 60.3
ECA236G3536 Erigeron canadensis HOM05D000470 ORTHO05D000348 2.8e-12 76.3 57 64.9
Sp3g17060 Schrenkiella parvula HOM05D000470 ORTHO05D000348 2.8e-12 76.3 72 55.6
Aa31LG3G14050 Aethionema arabicum HOM05D000470 ORTHO05D000348 3.7e-12 75.9 63 55.6
A09p51390 Brassica napus HOM05D000470 ORTHO05D000348 3.7e-12 75.9 64 59.4
BraA09t40580Z Brassica rapa HOM05D000470 ORTHO05D000348 3.7e-12 75.9 64 59.4
Carub.0005s2570 Capsella rubella HOM05D000470 ORTHO05D000348 3.7e-12 75.9 62 54.8
SGA_v2.0_scaffold42G15924 Striga asiatica HOM05D000470 ORTHO05D000348 3.7e-12 75.9 66 60.6
TWI38G0732 Tripterygium wilfordii HOM05D000470 ORTHO05D000348 3.7e-12 75.9 71 56.3
Ah.01g021670 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.8e-12 75.5 60 60.0
Duzib132G0905 Durio zibethinus HOM05D000470 ORTHO05D000348 4.8e-12 75.5 59 59.3
CARHR169330 Cardamine hirsuta HOM05D000470 ORTHO05D000348 6.3e-12 75.1 58 58.6
FvH4_5g28740 Fragaria vesca HOM05D000470 ORTHO05D000348 6.3e-12 75.1 73 53.4
AUR62011670 Chenopodium quinoa HOM05D000470 ORTHO05D000348 8.3e-12 74.7 97 46.4
Sed0019853 Sechium edule HOM05D000470 ORTHO05D000348 8.3e-12 74.7 61 59.0
AUR62016493 Chenopodium quinoa HOM05D000470 ORTHO05D000348 1.1e-11 74.3 96 46.9
MD08G1238700 Malus domestica HOM05D000470 ORTHO05D000348 1.1e-11 74.3 69 53.6
MELO3C019432.2 Cucumis melo HOM05D000470 ORTHO05D000348 1.4e-11 73.9 56 60.7
CSS0010732 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 1.8e-11 73.6 52 65.4
TPR.G6792 Trifolium pratense HOM05D000470 ORTHO05D000348 1.8e-11 73.6 56 60.7
CSS0027499 Camellia sinensis var. sinensis HOM05D000470 ORTHO05D000348 2.4e-11 73.2 51 66.7
PSO017G4454 Papaver somniferum HOM05D000470 ORTHO05D000348 2.4e-11 73.2 71 52.1
PSO170G2243 Papaver somniferum HOM05D000470 ORTHO05D000348 2.4e-11 73.2 71 52.1
AL5G40770 Arabidopsis lyrata HOM05D000470 ORTHO05D000348 3.1e-11 72.8 62 58.1
CDE04G2198 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 3.1e-11 72.8 56 64.3
FAN04G2928 Fragaria x ananassa HOM05D000470 ORTHO05D000348 3.1e-11 72.8 72 52.8
FAN08G2299 Fragaria x ananassa HOM05D000470 ORTHO05D000348 3.1e-11 72.8 72 52.8
FAN18G1158 Fragaria x ananassa HOM05D000470 ORTHO05D000348 3.1e-11 72.8 72 52.8
SalBow3G2199 Salvia bowleyana HOM05D000470 ORTHO05D000348 3.1e-11 72.8 52 67.3
MSTRG.27852 Avicennia marina HOM05D000470 ORTHO05D000348 4.1e-11 72.4 60 58.3
Cfa005490 Carpinus fangiana HOM05D000470 ORTHO05D000348 4.1e-11 72.4 56 60.7
Haze_01815 Corylus avellana HOM05D000470 ORTHO05D000348 4.1e-11 72.4 56 60.7
CsaV3_3G019260 Cucumis sativus L. HOM05D000470 ORTHO05D000348 4.1e-11 72.4 56 60.7
Phvul.002G248600 Phaseolus vulgaris HOM05D000470 ORTHO05D000348 4.1e-11 72.4 85 49.4
Sabra06G0061700 Salix brachista HOM05D000470 ORTHO05D000348 4.1e-11 72.4 66 54.5
CDE02G3368 Ceratophyllum demersum HOM05D000470 ORTHO05D000348 5.4e-11 72.0 56 64.3
CiPaw.06G144100 Carya illinoinensis HOM05D000470 ORTHO05D000348 7.0e-11 71.6 62 53.2
Peaxi162Scf00011g00738 Petunia axillaris HOM05D000470 ORTHO05D000348 7.0e-11 71.6 73 58.9
unitig_699.g19854 Utricularia gibba HOM05D000470 ORTHO05D000348 7.0e-11 71.6 54 64.8
ClCG05G009450 Citrullus lanatus HOM05D000470 ORTHO05D000348 9.1e-11 71.2 56 60.7
Gohir.A04G121700 Gossypium hirsutum HOM05D000470 ORTHO05D000348 9.1e-11 71.2 54 64.8
Gohir.D04G163500 Gossypium hirsutum HOM05D000470 ORTHO05D000348 9.1e-11 71.2 54 64.8
Gorai.012G151400 Gossypium raimondii HOM05D000470 ORTHO05D000348 9.1e-11 71.2 54 64.8
Duzib052G0260 Durio zibethinus HOM05D000470 ORTHO05D000348 1.2e-10 70.9 66 59.1
Psat7g062520 Pisum sativum HOM05D000470 ORTHO05D000348 1.2e-10 70.9 57 57.9
SEGI_41113 Sequoiadendron giganteum HOM05D000470 ORTHO05D000348 1.2e-10 70.9 56 64.3
Thecc.02G090400 Theobroma cacao HOM05D000470 ORTHO05D000348 1.2e-10 70.9 56 62.5
ClCG02G000240 Citrullus lanatus HOM05D000470 ORTHO05D000348 2.0e-10 70.1 56 58.9
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 2.0e-10 70.1 41 80.5
Lj4g0010307 Lotus japonicus HOM05D000470 ORTHO05D000348 2.0e-10 70.1 72 50.0
Lalb_Chr07g0185811 Lupinus albus HOM05D000470 ORTHO05D000348 2.0e-10 70.1 57 57.9
PGSC0003DMG402024930 Solanum tuberosum HOM05D000470 ORTHO05D000348 2.0e-10 70.1 65 55.4
Glyma.05G168200 Glycine max HOM05D000470 ORTHO05D000348 2.7e-10 69.7 57 56.1
Sed0026970 Sechium edule HOM05D000470 ORTHO05D000348 2.7e-10 69.7 56 58.9
arahy.Tifrunner.gnm1.ann1.238EGH Arachis hypogaea HOM05D000470 ORTHO05D000348 3.5e-10 69.3 68 54.4
arahy.Tifrunner.gnm1.ann1.FTHC3L Arachis hypogaea HOM05D000470 ORTHO05D000348 3.5e-10 69.3 68 54.4
Cc02_g22860 Coffea canephora HOM05D000470 ORTHO05D000348 3.5e-10 69.3 44 70.5
Nitab4.5_0000980g0300 Nicotiana tabacum HOM05D000470 ORTHO05D000348 3.5e-10 69.3 54 64.8
Oeu000124.2 Olea europaea HOM05D000470 ORTHO05D000348 3.5e-10 69.3 52 63.5
arahy.Tifrunner.gnm1.ann1.G953P0 Arachis hypogaea HOM05D000470 ORTHO05D000348 4.5e-10 68.9 59 55.9
CAN.G798.32 Capsicum annuum HOM05D000470 ORTHO05D000348 4.5e-10 68.9 54 64.8
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 4.5e-10 68.9 46 69.6
Lj5A255G82 Lonicera japonica HOM05D000470 ORTHO05D000348 4.5e-10 68.9 51 64.7
Solyc01g103890.3 Solanum lycopersicum HOM05D000470 ORTHO05D000348 4.5e-10 68.9 70 57.1
Sopen01g046290 Solanum pennellii HOM05D000470 ORTHO05D000348 4.5e-10 68.9 70 57.1
GSVIVG01022826001 Vitis vinifera HOM05D000470 ORTHO05D000348 5.9e-10 68.6 44 68.2
Dinv31532 Davidia involucrata HOM05D000470 ORTHO05D022243 7.7e-10 68.2 39 84.6
Rhsim05G0093800 Rhododendron simsii HOM05D000470 ORTHO05D000348 7.7e-10 68.2 46 67.4
RcHm_v2.0_Chr1g0372101 Rosa chinensis HOM05D000470 ORTHO05D000348 7.7e-10 68.2 57 59.6
THA.LOC104801422 Tarenaya hassleriana HOM05D000470 ORTHO05D000348 7.7e-10 68.2 51 60.8
VMungo0251G1158 Vigna mungo HOM05D000470 ORTHO05D000348 7.7e-10 68.2 85 49.4
arahy.Tifrunner.gnm1.ann1.A63TPZ Arachis hypogaea HOM05D000470 ORTHO05D000348 1.0e-09 67.8 59 55.9
Glyma.08G126600 Glycine max HOM05D000470 ORTHO05D000348 1.0e-09 67.8 59 55.9
QL02p099831 Quercus lobata HOM05D000470 ORTHO05D000348 1.0e-09 67.8 56 60.7
Atru.chr6.696 Acer truncatum HOM05D000470 ORTHO05D000348 1.7e-09 67.0 44 65.9
BcaB06g25948 Brassica carinata HOM05D000470 ORTHO05D000348 2.3e-09 66.6 51 58.8
BcaC02g09452 Brassica carinata HOM05D000470 ORTHO05D000348 2.3e-09 66.6 85 43.5
A05p30620 Brassica napus HOM05D000470 ORTHO05D000348 2.3e-09 66.6 51 58.8
C05p46500 Brassica napus HOM05D000470 ORTHO05D000348 2.3e-09 66.6 51 58.8
BolC5t33378H Brassica oleracea HOM05D000470 ORTHO05D000348 2.3e-09 66.6 51 58.8
BraA05t21904Z Brassica rapa HOM05D000470 ORTHO05D000348 2.3e-09 66.6 51 58.8
MSTRG.5219 Avicennia marina HOM05D000470 ORTHO05D000348 2.9e-09 66.2 49 61.2
SEGI_03451 Sequoiadendron giganteum HOM05D000470 ORTHO05D022243 2.9e-09 66.2 57 61.4
PGR142G0438 Punica granatum HOM05D000470 ORTHO05D000348 3.8e-09 65.9 44 68.2
SMO364G0894 Selaginella moellendorffii HOM05D000470 ORTHO05D000348 3.8e-09 65.9 58 53.4
Nitab4.5_0000948g0260 Nicotiana tabacum HOM05D000470 ORTHO05D000348 5.0e-09 65.5 52 63.5
Nitab4.5_0004287g0010 Nicotiana tabacum HOM05D000470 ORTHO05D000348 5.0e-09 65.5 58 58.6
Eucgr.I02748 Eucalyptus grandis HOM05D000470 ORTHO05D000348 6.5e-09 65.1 46 63.0
HPP92_026249 Vanilla planifolia HOM05D000470 ORTHO05D000348 6.5e-09 65.1 83 47.0
unitig_62.g23620 Utricularia gibba HOM05D000470 ORTHO05D000348 8.6e-09 64.7 65 58.5
C04p42910 Brassica napus HOM05D000470 ORTHO05D000348 1.1e-08 64.3 85 42.4
BolC4t25860H Brassica oleracea HOM05D000470 ORTHO05D000348 1.1e-08 64.3 85 42.4
DCAR_021345 Daucus carota HOM05D000470 ORTHO05D000348 1.9e-08 63.5 59 55.9
Nitab4.5_0002698g0060 Nicotiana tabacum HOM05D000470 ORTHO05D000348 2.5e-08 63.2 52 61.5
ATR0705G103 Amborella trichopoda HOM05D000470 ORTHO05D000348 3.2e-08 62.8 54 55.6
Zm00001eb022650 Zea mays HOM05D000470 ORTHO05D000348 3.2e-08 62.8 63 49.2
Lalb_Chr13g0295651 Lupinus albus HOM05D000470 ORTHO05D022243 4.2e-08 62.4 57 52.6
A04p09050 Brassica napus HOM05D000470 ORTHO05D000348 5.5e-08 62.0 92 42.4
BraA04t16600Z Brassica rapa HOM05D000470 ORTHO05D000348 5.5e-08 62.0 92 42.4
Pp3c4_21750 Physcomitrium patens HOM05D000470 ORTHO05D000348 5.5e-08 62.0 49 53.1
SalBow7G3508 Salvia bowleyana HOM05D000470 ORTHO05D000348 5.5e-08 62.0 54 57.4
ATR0684G095 Amborella trichopoda HOM05D000470 ORTHO05D000348 7.2e-08 61.6 49 59.2
unitig_22.g6853 Utricularia gibba HOM05D000470 ORTHO05D000348 7.2e-08 61.6 57 57.9
Pp3c12_6460 Physcomitrium patens HOM05D000470 ORTHO05D000348 9.5e-08 61.2 80 40.0
BcaB03g16159 Brassica carinata HOM05D000470 ORTHO05D000348 1.6e-07 60.5 78 41.0
Mapoly0097s0060 Marchantia polymorpha HOM05D000470 ORTHO05D000348 2.1e-07 60.1 54 51.9
SalBow7G2182 Salvia bowleyana HOM05D000470 ORTHO05D000348 2.8e-07 59.7 49 61.2
SalBow7G0659 Salvia bowleyana HOM05D000470 ORTHO05D000348 3.6e-07 59.3 46 60.9
Sp7g09820 Schrenkiella parvula HOM05D000470 ORTHO05D000348 6.1e-07 58.5 77 42.9
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 8.0e-07 58.2 29 89.7
SalBow7G2002 Salvia bowleyana HOM05D000470 ORTHO05D022243 8.0e-07 58.2 46 58.7
Pp3c3_5770 Physcomitrium patens HOM05D000470 ORTHO05D000348 1.0e-06 57.8 86 33.7
Carub.0007s1209 Capsella rubella HOM05D000470 ORTHO05D000348 1.8e-06 57.0 58 50.0
Zm00001eb393930 Zea mays HOM05D000470 ORTHO05D000348 2.3e-06 56.6 60 45.0
CARHR236370 Cardamine hirsuta HOM05D000470 ORTHO05D000348 4.0e-06 55.8 64 48.4
Os10g0545000 Oryza sativa ssp. japonica HOM05D000470 ORTHO05D022243 4.0e-06 55.8 61 44.3


User provided reference genes

Program Settings