Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01682 Davidia involucrata HOM05D001356 ORTHO05D000012 4.9e-86 321.2 180 100.0
Dinv11215 Davidia involucrata HOM05D001356 ORTHO05D005768 1.2e-26 124.0 86 76.7
Dinv23197 Davidia involucrata HOM05D001356 ORTHO05D005768 2.2e-25 119.8 88 71.6
Actinidia36833 Actinidia chinensis HOM05D001356 ORTHO05D005768 3.8e-22 109.0 85 68.2
Actinidia08896 Actinidia chinensis HOM05D001356 ORTHO05D005768 1.5e-21 107.1 85 65.9
Prupe.5G144800 Prunus persica HOM05D001356 ORTHO05D005768 5.6e-21 105.1 86 62.8
CSS0007451 Camellia sinensis var. sinensis HOM05D001356 ORTHO05D005768 1.6e-20 103.6 86 65.1
Atru.chr6.1892 Acer truncatum HOM05D001356 ORTHO05D005768 2.1e-20 103.2 88 61.4
CiPaw.12G001800 Carya illinoinensis HOM05D001356 ORTHO05D005768 2.1e-20 103.2 85 63.5
Lj9A484T65 Lonicera japonica HOM05D001356 ORTHO05D005768 2.1e-20 103.2 85 62.4
Cpa.g.sc4.117 Carica papaya HOM05D001356 ORTHO05D005768 2.8e-20 102.8 85 62.4
Lj5C91T4 Lonicera japonica HOM05D001356 ORTHO05D005768 4.7e-20 102.1 85 62.4
MD06G1133700 Malus domestica HOM05D001356 ORTHO05D005768 1.8e-19 100.1 84 61.9
Ciclev10031112m.g Citrus clementina HOM05D001356 ORTHO05D005768 3.0e-19 99.4 86 61.6
RcHm_v2.0_Chr7g0189111 Rosa chinensis HOM05D001356 ORTHO05D005768 5.2e-19 98.6 88 59.1
TAR629G3251 Trochodendron aralioides HOM05D001356 ORTHO05D005768 5.2e-19 98.6 89 60.7
Peaxi162Scf00171g00113 Petunia axillaris HOM05D001356 ORTHO05D005768 6.8e-19 98.2 85 60.0
FAN13G1444 Fragaria x ananassa HOM05D001356 ORTHO05D005768 1.2e-18 97.4 88 60.2
Aa31LG3G7400 Aethionema arabicum HOM05D001356 ORTHO05D005768 1.5e-18 97.1 100 55.0
FvH4_5g09100 Fragaria vesca HOM05D001356 ORTHO05D005768 1.5e-18 97.1 88 60.2
FAN04G0867 Fragaria x ananassa HOM05D001356 ORTHO05D005768 1.5e-18 97.1 88 60.2
FAN18G4028 Fragaria x ananassa HOM05D001356 ORTHO05D005768 1.5e-18 97.1 88 60.2
Hma1.2p1_0168F.1_g074170 Hydrangea macrophylla HOM05D001356 ORTHO05D005768 1.5e-18 97.1 86 62.8
Eucgr.K02202 Eucalyptus grandis HOM05D001356 ORTHO05D005768 2.0e-18 96.7 105 55.2
MD14G1150000 Malus domestica HOM05D001356 ORTHO05D005768 2.6e-18 96.3 84 60.7
TWI23G0437 Tripterygium wilfordii HOM05D001356 ORTHO05D005768 2.6e-18 96.3 86 59.3
GSVIVG01008619001 Vitis vinifera HOM05D001356 ORTHO05D005768 2.6e-18 96.3 84 59.5
CARHR257360 Cardamine hirsuta HOM05D001356 ORTHO05D005768 3.4e-18 95.9 88 58.0
AT5G50900 Arabidopsis thaliana HOM05D001356 ORTHO05D005768 4.4e-18 95.5 88 58.0
Dinv29646 Davidia involucrata HOM05D000005 ORTHO05D000012 4.4e-18 95.5 43 93.0
Duzib084G0402 Durio zibethinus HOM05D001356 ORTHO05D005768 4.4e-18 95.5 86 59.3
FAN08G3029 Fragaria x ananassa HOM05D001356 ORTHO05D005768 4.4e-18 95.5 88 59.1
Cfa018730 Carpinus fangiana HOM05D001356 ORTHO05D005768 5.7e-18 95.1 85 60.0
Haze_07122 Corylus avellana HOM05D001356 ORTHO05D005768 5.7e-18 95.1 85 60.0
PSO017G0138 Papaver somniferum HOM05D001356 ORTHO05D005768 5.7e-18 95.1 99 50.5
PSO478G2570 Papaver somniferum HOM05D001356 ORTHO05D005768 5.7e-18 95.1 99 50.5
QL10p001085 Quercus lobata HOM05D001356 ORTHO05D005768 5.7e-18 95.1 85 60.0
Thecc.03G137400 Theobroma cacao HOM05D001356 ORTHO05D005768 5.7e-18 95.1 86 58.1
DCAR_016359 Daucus carota HOM05D001356 ORTHO05D005768 9.8e-18 94.4 84 60.7
CAN.G637.60 Capsicum annuum HOM05D001356 ORTHO05D005768 1.3e-17 94.0 85 58.8
AL8G25090 Arabidopsis lyrata HOM05D001356 ORTHO05D005768 2.2e-17 93.2 88 59.1
Lalb_Chr23g0272951 Lupinus albus HOM05D001356 ORTHO05D005768 2.2e-17 93.2 96 55.2
THA.LOC104808043 Tarenaya hassleriana HOM05D001356 ORTHO05D005768 2.2e-17 93.2 88 54.5
TWI39G1035 Tripterygium wilfordii HOM05D001356 ORTHO05D005768 2.2e-17 93.2 86 58.1
Duzib205G0014 Durio zibethinus HOM05D001356 ORTHO05D005768 2.9e-17 92.8 86 57.0
PGSC0003DMG400012021 Solanum tuberosum HOM05D001356 ORTHO05D005768 2.9e-17 92.8 86 57.0
Gohir.A07G047900 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.7e-17 92.4 84 58.3
Aqoxy3G01748 Aquilegia oxysepala HOM05D001356 ORTHO05D005768 4.9e-17 92.0 85 61.2
Thhalv10013161m.g Eutrema salsugineum HOM05D001356 ORTHO05D005768 6.4e-17 91.7 88 54.5
Carub.0008s1090 Capsella rubella HOM05D001356 ORTHO05D005768 8.3e-17 91.3 88 55.7
Manes.06G124800 Manihot esculenta HOM05D001356 ORTHO05D005768 1.1e-16 90.9 85 60.0
BraA02t06316Z Brassica rapa HOM05D001356 ORTHO05D005768 1.4e-16 90.5 88 55.7
COL.COLO4_16683 Corchorus olitorius HOM05D001356 ORTHO05D005768 1.4e-16 90.5 88 56.8
Nn3g16332 Nelumbo nucifera HOM05D001356 ORTHO05D005768 1.4e-16 90.5 88 58.0
Sp6g13030 Schrenkiella parvula HOM05D001356 ORTHO05D005768 1.4e-16 90.5 88 54.5
A02p12580 Brassica napus HOM05D001356 ORTHO05D005768 1.8e-16 90.1 88 55.7
Gohir.D07G052200 Gossypium hirsutum HOM05D001356 ORTHO05D005768 2.4e-16 89.7 84 57.1
Gorai.001G055200 Gossypium raimondii HOM05D001356 ORTHO05D005768 2.4e-16 89.7 84 57.1
TAR371G0001 Trochodendron aralioides HOM05D001356 ORTHO05D005768 2.4e-16 89.7 105 51.4
C02p20640 Brassica napus HOM05D001356 ORTHO05D005768 3.2e-16 89.4 88 55.7
BolC2t08206H Brassica oleracea HOM05D001356 ORTHO05D005768 3.2e-16 89.4 88 55.7
Potri.015G103700 Populus trichocarpa HOM05D001356 ORTHO05D005768 3.2e-16 89.4 85 60.0
Sabra15G0123200 Salix brachista HOM05D001356 ORTHO05D005768 4.1e-16 89.0 85 58.8
Solyc03g097740.1 Solanum lycopersicum HOM05D001356 ORTHO05D005768 4.1e-16 89.0 85 56.5
Sopen03g028480 Solanum pennellii HOM05D001356 ORTHO05D005768 4.1e-16 89.0 85 56.5
BcaB05g24024 Brassica carinata HOM05D001356 ORTHO05D005768 5.4e-16 88.6 88 55.7
A03p16520 Brassica napus HOM05D001356 ORTHO05D005768 5.4e-16 88.6 86 57.0
BolC3t14326H Brassica oleracea HOM05D001356 ORTHO05D005768 5.4e-16 88.6 86 57.0
BraA03t10939Z Brassica rapa HOM05D001356 ORTHO05D005768 5.4e-16 88.6 86 57.0
Dinv07688 Davidia involucrata HOM05D001356 ORTHO05D184346 7.0e-16 88.2 65 70.8
Migut.O00351 Erythranthe guttata HOM05D001356 ORTHO05D005768 7.0e-16 88.2 85 54.1
Nitab4.5_0001451g0010 Nicotiana tabacum HOM05D001356 ORTHO05D005768 7.0e-16 88.2 85 55.3
MSTRG.11257 Avicennia marina HOM05D001356 ORTHO05D005768 1.2e-15 87.4 99 48.5
Lj1g0001437 Lotus japonicus HOM05D001356 ORTHO05D005768 1.2e-15 87.4 88 51.1
HanXRQChr09g0273601 Helianthus annuus HOM05D001356 ORTHO05D005768 2.0e-15 86.7 97 47.4
Manes.14G046700 Manihot esculenta HOM05D001356 ORTHO05D005768 3.5e-15 85.9 88 58.0
Sc04g0000320 Simmondsia chinensis HOM05D001356 ORTHO05D005768 3.5e-15 85.9 89 55.1
SalBow5G4223 Salvia bowleyana HOM05D001356 ORTHO05D005768 4.6e-15 85.5 99 46.5
Nitab4.5_0001825g0010 Nicotiana tabacum HOM05D001356 ORTHO05D005768 5.9e-15 85.1 85 52.9
Sabra12G0076800 Salix brachista HOM05D001356 ORTHO05D005768 5.9e-15 85.1 100 52.0
Ah.11g046540 Amaranthus hybridus HOM05D001356 ORTHO05D005768 7.8e-15 84.7 92 52.2
BcaC03g14631 Brassica carinata HOM05D001356 ORTHO05D005768 7.8e-15 84.7 88 53.4
Sed0003645 Sechium edule HOM05D001356 ORTHO05D005768 7.8e-15 84.7 89 55.1
Potri.012G104400 Populus trichocarpa HOM05D001356 ORTHO05D005768 1.0e-14 84.3 85 60.0
Sed0000393 Sechium edule HOM05D001356 ORTHO05D005768 1.0e-14 84.3 89 53.9
Cc04_g09470 Coffea canephora HOM05D001356 ORTHO05D005768 1.3e-14 84.0 85 52.9
Medtr3g098730 Medicago truncatula HOM05D001356 ORTHO05D005768 1.3e-14 84.0 91 48.4
AUR62029532 Chenopodium quinoa HOM05D001356 ORTHO05D005768 1.7e-14 83.6 92 53.3
AUR62034787 Chenopodium quinoa HOM05D001356 ORTHO05D005768 1.7e-14 83.6 92 53.3
MSTRG.4626 Avicennia marina HOM05D001356 ORTHO05D005768 3.0e-14 82.8 99 46.5
Dinv29649 Davidia involucrata HOM05D000005 ORTHO05D000012 3.0e-14 82.8 43 83.7
Gohir.A09G247700 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.9e-14 82.4 114 43.0
MBI11_g14284_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D005768 5.0e-14 82.0 88 50.0
Oeu058113.1 Olea europaea HOM05D001356 ORTHO05D005768 5.0e-14 82.0 100 47.0
ClCG01G009870 Citrullus lanatus HOM05D001356 ORTHO05D005768 6.6e-14 81.6 99 46.5
Dinv29640 Davidia involucrata HOM05D000005 ORTHO05D000012 8.6e-14 81.3 42 88.1
Ah.02g114680 Amaranthus hybridus HOM05D001356 ORTHO05D005768 1.1e-13 80.9 92 50.0
MELO3C021709.2 Cucumis melo HOM05D001356 ORTHO05D005768 1.1e-13 80.9 99 46.5
CsaV3_1G045910 Cucumis sativus L. HOM05D001356 ORTHO05D005768 1.1e-13 80.9 99 46.5
ECA232G2864 Erigeron canadensis HOM05D001356 ORTHO05D005768 1.1e-13 80.9 87 54.0
Lsat_1_v5_gn_1_32360 Lactuca sativa HOM05D001356 ORTHO05D005768 1.1e-13 80.9 84 52.4
Psat5g053840 Pisum sativum HOM05D001356 ORTHO05D005768 1.1e-13 80.9 91 47.3
EL10Ac5g11336 Beta vulgaris HOM05D001356 ORTHO05D005768 1.5e-13 80.5 89 49.4
Gorai.006G272800 Gossypium raimondii HOM05D001356 ORTHO05D005768 1.5e-13 80.5 114 43.0
TPR.G21579 Trifolium pratense HOM05D001356 ORTHO05D005768 1.9e-13 80.1 91 46.2
Glyma.06G166000 Glycine max HOM05D001356 ORTHO05D005768 2.5e-13 79.7 100 46.0
Lsat_1_v5_gn_4_84081 Lactuca sativa HOM05D001356 ORTHO05D005768 2.5e-13 79.7 87 48.3
Gohir.D09G248500 Gossypium hirsutum HOM05D001356 ORTHO05D005768 3.3e-13 79.3 114 42.1
PGR044G0706 Punica granatum HOM05D001356 ORTHO05D005768 7.3e-13 78.2 89 47.2
SHI14133 Sapria himalayana HOM05D001356 ORTHO05D005768 9.5e-13 77.8 85 49.4
Ca_16078_v3 Cicer arietinum L. HOM05D001356 ORTHO05D005768 1.2e-12 77.4 87 46.0
VMungo1309G3027 Vigna mungo HOM05D001356 ORTHO05D005768 4.7e-12 75.5 89 44.9
SGA_v2.0_scaffold40G15596 Striga asiatica HOM05D001356 ORTHO05D005768 6.2e-12 75.1 85 50.6
Glyma.04G199500 Glycine max HOM05D001356 ORTHO05D005768 8.0e-12 74.7 89 48.3
Oeu019019.1 Olea europaea HOM05D001356 ORTHO05D005768 1.8e-11 73.6 101 41.6
ATR0582G114 Amborella trichopoda HOM05D001356 ORTHO05D005768 6.8e-11 71.6 91 44.0
HanXRQChr02g0059861 Helianthus annuus HOM05D001356 ORTHO05D005768 1.5e-10 70.5 87 50.6
Hma1.2p1_0507F.1_g168650 Hydrangea macrophylla HOM05D001356 ORTHO05D005768 1.5e-10 70.5 70 60.0
Phvul.009G163700 Phaseolus vulgaris HOM05D001356 ORTHO05D005768 2.0e-10 70.1 89 44.9
Dinv01685 Davidia involucrata HOM05D000005 ORTHO05D000012 9.8e-10 67.8 43 72.1
unitig_27.g25086 Utricularia gibba HOM05D001356 ORTHO05D005768 1.3e-09 67.4 99 39.4
Dinv29645 Davidia involucrata HOM05D000005 ORTHO05D000012 2.2e-09 66.6 43 62.8
unitig_744.g24640 Utricularia gibba HOM05D001356 ORTHO05D005768 4.9e-09 65.5 102 37.3
CDE05G2390 Ceratophyllum demersum HOM05D001356 ORTHO05D005768 8.3e-09 64.7 107 40.2
ECA247G0908 Erigeron canadensis HOM05D001356 ORTHO05D005768 1.4e-08 63.9 87 46.0
BcaC05g25107 Brassica carinata HOM05D001356 ORTHO05D005768 1.9e-08 63.5 68 55.9
CDE05G1548 Ceratophyllum demersum HOM05D001356 ORTHO05D005768 5.4e-08 62.0 88 44.3
Dinv38457 Davidia involucrata HOM05D010983 ORTHO05D000012 1.2e-07 60.8 43 62.8
CSS0022340 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.0e-07 60.1 42 64.3
Dinv38461 Davidia involucrata HOM05D000005 ORTHO05D000012 2.0e-07 60.1 43 65.1
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.0e-07 60.1 43 60.5
CSS0040509 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 6.0e-07 58.5 43 60.5
BcaC01g06057 Brassica carinata HOM05D001356 ORTHO05D005768 7.8e-07 58.2 46 60.9
C03p19450 Brassica napus HOM05D001356 ORTHO05D005768 7.8e-07 58.2 46 60.9
SEGI_14099 Sequoiadendron giganteum HOM05D001356 ORTHO05D003895 7.8e-07 58.2 98 32.7
Dinv38459 Davidia involucrata HOM05D000005 ORTHO05D000012 1.0e-06 57.8 42 64.3
Prupe.3G009700 Prunus persica HOM05D000005 ORTHO05D000012 1.0e-06 57.8 43 51.2
Dinv00400 Davidia involucrata HOM05D000005 ORTHO05D000012 2.3e-06 56.6 44 61.4
Dinv00401 Davidia involucrata HOM05D000005 ORTHO05D000012 2.3e-06 56.6 43 60.5
Dinv29690 Davidia involucrata HOM05D000005 ORTHO05D000012 2.3e-06 56.6 43 60.5
Dinv38460 Davidia involucrata HOM05D000005 ORTHO05D000012 2.3e-06 56.6 43 60.5
Hma1.2p1_0046F.1_g027600 Hydrangea macrophylla HOM05D001356 ORTHO05D005768 2.3e-06 56.6 72 54.2
vmacro01622 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 3.9e-06 55.8 43 53.5


User provided reference genes

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