Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 5.2e-171 604.4 323 100.0
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 3.4e-154 548.5 314 91.4
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 1.4e-107 393.7 299 70.6
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 7.2e-104 381.3 296 67.6
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 1.0e-102 377.5 279 69.9
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 2.6e-93 346.3 281 66.2
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 3.5e-90 335.9 276 63.0
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.0e-89 334.3 292 63.7
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.0e-89 332.0 294 61.2
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 3.2e-88 329.3 277 59.2
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 6.8e-86 321.6 302 59.6
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 2.6e-85 319.7 279 61.3
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 7.5e-85 318.2 276 56.2
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 4.9e-84 315.5 277 61.4
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 6.3e-84 315.1 276 61.2
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.4e-83 313.9 279 57.3
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 2.0e-82 310.1 296 58.8
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 4.5e-82 308.9 276 58.3
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 5.9e-82 308.5 277 60.3
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 1.7e-81 307.0 277 59.9
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 8.6e-81 304.7 277 59.6
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 7.3e-80 301.6 279 56.3
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 3.6e-79 299.3 278 57.9
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.0e-78 297.7 280 56.4
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 1.4e-78 297.4 297 57.2
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 2.3e-78 296.6 293 52.6
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 4.4e-77 292.4 279 55.9
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.2e-74 284.3 279 53.0
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.6e-74 283.9 304 55.6
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 3.0e-73 279.6 278 54.3
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 6.6e-73 278.5 281 52.0
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 8.6e-73 278.1 281 52.7
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 1.2e-71 274.2 302 51.0
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 4.7e-71 272.3 281 53.0
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 6.2e-71 271.9 278 54.3
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.4e-70 270.8 277 54.5
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 4.0e-70 269.2 271 55.7
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 6.8e-70 268.5 284 52.1
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 8.9e-70 268.1 302 49.7
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 2.0e-69 266.9 281 54.4
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.6e-69 266.5 278 54.0
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 2.6e-69 266.5 280 51.8
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.4e-69 266.2 277 50.5
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 4.4e-69 265.8 290 52.4
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 4.4e-69 265.8 279 53.0
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 4.4e-69 265.8 288 51.0
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 7.5e-69 265.0 279 52.3
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 1.7e-68 263.8 277 49.8
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 2.9e-68 263.1 288 51.4
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.3e-68 261.5 281 50.5
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 2.4e-67 260.0 290 51.0
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 4.1e-67 259.2 288 51.0
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.4e-67 258.8 281 48.8
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 1.2e-66 257.7 281 49.1
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 1.6e-66 257.3 281 49.1
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 3.5e-66 256.1 278 54.0
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 3.5e-66 256.1 284 52.8
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.6e-66 255.8 281 49.5
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 1.1e-64 251.1 298 47.7
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.9e-64 250.4 172 70.9
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 1.2e-63 247.7 290 49.3
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 1.2e-63 247.7 290 49.3
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 1.2e-63 247.7 280 49.3
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 4.7e-63 245.7 292 50.0
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 3.4e-61 239.6 292 46.6
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 2.2e-60 236.9 291 47.8
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 6.4e-60 235.3 281 49.5
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 1.9e-59 233.8 294 47.6
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 5.4e-59 232.3 292 47.3
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 7.1e-59 231.9 288 46.2
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 9.2e-59 231.5 285 47.4
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 9.2e-59 231.5 288 45.8
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 4.6e-58 229.2 290 45.9
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 3.0e-57 226.5 147 75.5
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 1.1e-56 224.6 173 64.2
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 3.3e-56 223.0 281 48.0
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 2.8e-55 219.9 285 45.6
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 6.8e-54 215.3 208 56.2
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 2.0e-53 213.8 294 44.2
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 3.8e-52 209.5 288 44.4
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 3.8e-52 209.5 248 47.6
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 9.2e-51 204.9 278 45.7
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 3.5e-50 203.0 279 44.1
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 7.8e-50 201.8 274 43.8
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 7.8e-50 201.8 279 43.7
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 1.0e-49 201.4 171 59.1
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.9e-48 197.2 172 57.0
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 4.4e-45 186.0 143 63.6
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.6e-29 132.1 129 58.9
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 1.6e-26 124.4 297 30.6
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.0e-26 122.5 104 53.8
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 7.9e-26 122.1 104 53.8
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.3e-25 120.6 103 53.4
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 4.0e-22 109.8 289 30.1
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 2.0e-21 107.5 112 51.8
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.5e-20 102.4 75 68.0
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 8.4e-20 102.1 254 32.3
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.1e-19 101.7 98 62.2
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 5.3e-14 82.8 101 54.5
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.9e-09 66.6 49 59.2
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.9e-09 66.6 42 76.2
Lsat_1_v5_gn_7_104380 Lactuca sativa HOM05D005711 ORTHO05D007125 1.4e-06 58.2 108 39.8


User provided reference genes

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