Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 1.2e-98 363.2 197 100.0
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 1.7e-55 219.9 139 77.0
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 1.3e-50 203.8 139 71.2
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.6e-50 203.4 124 79.8
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.4e-46 190.3 175 57.7
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 4.2e-46 188.7 140 62.1
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.5e-45 185.7 108 83.3
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.5e-45 185.7 108 83.3
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 3.0e-44 182.6 122 72.1
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.5e-43 180.3 115 76.5
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 3.3e-43 179.1 175 62.3
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 7.4e-43 177.9 111 76.6
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 3.1e-41 172.6 108 76.9
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 5.3e-41 171.8 180 60.0
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 6.9e-41 171.4 107 75.7
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 6.9e-41 171.4 129 77.5
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 9.0e-41 171.0 107 72.0
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 4.5e-40 168.7 107 73.8
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 5.8e-40 168.3 108 75.0
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 1.0e-39 167.5 107 75.7
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 2.9e-39 166.0 139 57.6
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 6.5e-39 164.9 107 73.8
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 8.4e-39 164.5 106 73.6
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 2.5e-38 162.9 140 60.7
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 4.2e-38 162.2 108 73.1
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 4.2e-38 162.2 107 72.0
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 5.5e-38 161.8 139 62.6
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 9.3e-38 161.0 108 72.2
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 9.3e-38 161.0 197 54.3
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 3.5e-37 159.1 106 70.8
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 4.6e-37 158.7 174 57.5
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 2.3e-36 156.4 107 69.2
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 2.3e-36 156.4 107 70.1
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 3.0e-36 156.0 107 72.0
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 1.1e-35 154.1 108 69.4
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 1.5e-35 153.7 105 70.5
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 1.9e-35 153.3 108 72.2
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.3e-35 152.1 107 68.2
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.3e-35 152.1 105 68.6
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 5.7e-35 151.8 108 69.4
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 7.4e-35 151.4 106 67.9
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 1.3e-34 150.6 109 70.6
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 1.6e-34 150.2 107 68.2
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 3.7e-34 149.1 109 70.6
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 6.3e-34 148.3 107 68.2
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 8.2e-34 147.9 107 67.3
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 8.2e-34 147.9 107 68.2
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 8.2e-34 147.9 101 70.3
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 8.2e-34 147.9 108 70.4
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 2.0e-32 143.3 107 66.4
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 2.6e-32 142.9 75 92.0
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 2.9e-31 139.4 102 67.6
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 3.8e-31 139.0 103 65.0
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 5.0e-31 138.7 107 64.5
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 7.2e-30 134.8 109 67.0
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 7.2e-30 134.8 109 67.0
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 7.2e-30 134.8 109 67.0
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 7.2e-30 134.8 107 60.7
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 9.4e-30 134.4 109 67.0
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 9.4e-30 134.4 109 67.0
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 1.2e-29 134.0 109 66.1
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 1.6e-29 133.7 109 67.0
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 2.1e-29 133.3 109 67.0
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 2.7e-29 132.9 108 65.7
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.4e-28 130.6 109 65.1
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 1.4e-28 130.6 108 57.4
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 1.8e-28 130.2 109 65.1
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 2.3e-28 129.8 109 66.1
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 4.3e-27 125.6 109 61.5
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 7.4e-27 124.8 81 76.5
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 2.2e-26 123.2 78 75.6
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.1e-25 119.0 139 48.2
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 6.9e-25 118.2 77 74.0
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.5e-24 117.1 79 75.9
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 2.6e-24 116.3 107 56.1
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 1.0e-23 114.4 81 71.6
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 1.3e-23 114.0 78 69.2
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.7e-23 113.6 78 69.2
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 2.2e-23 113.2 81 67.9
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 2.2e-23 113.2 77 72.7
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 5.0e-23 112.1 76 73.7
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 5.0e-23 112.1 76 73.7
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.4e-22 110.5 77 68.8
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 1.9e-22 110.2 78 69.2
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 1.9e-22 110.2 77 68.8
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.9e-22 110.2 77 67.5
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.9e-22 110.2 76 73.7
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 2.5e-22 109.8 78 67.9
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 2.5e-22 109.8 78 67.9
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 3.2e-22 109.4 92 59.8
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 3.2e-22 109.4 75 72.0
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 4.2e-22 109.0 77 67.5
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.2e-22 109.0 77 67.5
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.2e-22 109.0 77 67.5
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.2e-22 109.0 77 67.5
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 5.5e-22 108.6 77 67.5
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 7.2e-22 108.2 78 66.7
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 9.4e-22 107.8 80 62.5
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 2.1e-21 106.7 77 64.9
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 2.1e-21 106.7 77 66.2
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 2.7e-21 106.3 77 66.2
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 4.7e-21 105.5 75 69.3
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.8e-20 103.6 77 66.2
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 6.7e-20 101.7 134 46.3
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 3.3e-19 99.4 76 63.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 4.4e-19 99.0 75 64.0
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 2.2e-18 96.7 76 60.5
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 1.8e-17 93.6 72 66.7
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 4.1e-17 92.4 73 60.3
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 2.6e-16 89.7 77 58.4
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 4.7e-13 79.0 47 80.9
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 5.7e-11 72.0 97 42.3
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 6.3e-10 68.6 39 82.1
Cfa003712 Carpinus fangiana HOM05D006232 ORTHO05D007746 1.7e-07 60.5 130 33.8
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 2.2e-07 60.1 57 43.9
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.0e-07 58.9 163 35.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 6.5e-07 58.5 123 26.0
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 2.5e-06 56.6 160 35.6
CDE12G0148 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 4.2e-06 55.8 102 27.5


User provided reference genes

Program Settings