Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01518 Davidia involucrata HOM05D008876 ORTHO05D010747 2.7e-114 415.6 250 100.0
Dinv06861 Davidia involucrata HOM05D008876 ORTHO05D010747 4.1e-46 189.1 229 59.0
Hma1.2p1_0002F.1_g002230 Hydrangea macrophylla HOM05D008876 ORTHO05D010747 2.3e-33 146.7 263 45.6
Duzib132G0209 Durio zibethinus HOM05D008876 ORTHO05D010747 4.2e-19 99.4 246 41.1
Duzib132G0342 Durio zibethinus HOM05D008876 ORTHO05D010747 4.2e-19 99.4 246 41.1
QL08p040130 Quercus lobata HOM05D008876 ORTHO05D010747 3.6e-18 96.3 272 42.3
Ciclev10016096m.g Citrus clementina HOM05D008876 ORTHO05D010747 1.4e-17 94.4 304 38.2
Lj1P691T50 Lonicera japonica HOM05D008876 ORTHO05D010747 7.5e-16 88.6 70 64.3
Potri.007G137001 Populus trichocarpa HOM05D008876 ORTHO05D010747 9.8e-16 88.2 75 62.7
Manes.12G089700 Manihot esculenta HOM05D008876 ORTHO05D010747 1.3e-15 87.8 276 40.9
Actinidia11106 Actinidia chinensis HOM05D008876 ORTHO05D010747 2.2e-15 87.0 91 53.8
Medtr2g090660 Medicago truncatula HOM05D008876 ORTHO05D010747 2.2e-15 87.0 247 35.6
Actinidia11002 Actinidia chinensis HOM05D008876 ORTHO05D010747 3.7e-15 86.3 86 55.8
Ca_01482_v3 Cicer arietinum L. HOM05D008876 ORTHO05D010747 1.4e-14 84.3 242 42.1
Thecc.02G185800 Theobroma cacao HOM05D008876 ORTHO05D010747 5.4e-14 82.4 267 36.3
COL.COLO4_35512 Corchorus olitorius HOM05D008876 ORTHO05D010747 2.7e-13 80.1 278 37.4
CSS0024231 Camellia sinensis var. sinensis HOM05D007160 ORTHO05D005331 1.3e-12 77.8 234 38.9
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 5.0e-12 75.9 268 30.2
Phvul.005G100800 Phaseolus vulgaris HOM05D008876 ORTHO05D010747 1.1e-11 74.7 87 54.0
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 1.9e-11 73.9 169 34.9
FAN14G3778 Fragaria x ananassa HOM05D020475 ORTHO05D010747 1.9e-11 73.9 277 38.6
Lalb_Chr22g0356741 Lupinus albus HOM05D008876 ORTHO05D010747 2.5e-11 73.6 257 35.4
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 4.2e-11 72.8 263 30.8
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 5.5e-11 72.4 306 30.7
Oeu036079.1 Olea europaea HOM05D008876 ORTHO05D010747 5.5e-11 72.4 75 53.3
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 1.6e-10 70.9 257 31.9
Sabra17G0012100 Salix brachista HOM05D008876 ORTHO05D010747 1.6e-10 70.9 95 46.3
Sc17g0005960 Simmondsia chinensis HOM05D028926 ORTHO05D005331 2.1e-10 70.5 233 31.3
CiPaw.03G181200 Carya illinoinensis HOM05D008876 ORTHO05D010747 3.6e-10 69.7 274 31.4
Sc06g0009300 Simmondsia chinensis HOM05D025247 ORTHO05D026483 3.6e-10 69.7 223 31.4
FvH4_6g26650 Fragaria vesca HOM05D020475 ORTHO05D010747 4.7e-10 69.3 276 39.5
Glyma.13G294400 Glycine max HOM05D008876 ORTHO05D010747 4.7e-10 69.3 300 33.0
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 4.7e-10 69.3 287 27.9
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 6.1e-10 68.9 186 36.0
Eucgr.A01856 Eucalyptus grandis HOM05D008876 ORTHO05D010747 8.0e-10 68.6 70 47.1
TWI59G0664 Tripterygium wilfordii HOM05D008876 ORTHO05D010747 2.3e-09 67.0 237 33.8
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 3.0e-09 66.6 77 50.6
Cfa014657 Carpinus fangiana HOM05D008876 ORTHO05D010747 4.0e-09 66.2 174 36.8
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 5.2e-09 65.9 305 30.2
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 5.2e-09 65.9 225 32.9
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 5.2e-09 65.9 222 30.6
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 8.8e-09 65.1 281 28.1
MSTRG.14324 Avicennia marina HOM05D023055 ORTHO05D010747 1.2e-08 64.7 231 38.1
Cpa.g.sc83.91 Carica papaya HOM05D008876 ORTHO05D010747 1.2e-08 64.7 73 56.2
TAR626G0423 Trochodendron aralioides HOM05D018497 ORTHO05D021348 1.5e-08 64.3 234 34.6
Gohir.D02G177500 Gossypium hirsutum HOM05D008876 ORTHO05D010747 2.0e-08 63.9 256 36.3
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 2.6e-08 63.5 297 29.0
Lj3g0013370 Lotus japonicus HOM05D008876 ORTHO05D010747 3.4e-08 63.2 256 36.7
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 4.4e-08 62.8 80 46.2
Gorai.005G199300 Gossypium raimondii HOM05D008876 ORTHO05D010747 4.4e-08 62.8 257 37.7
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 5.7e-08 62.4 277 27.4
SalBow7G0780 Salvia bowleyana HOM05D007160 ORTHO05D005331 5.7e-08 62.4 150 34.0
ECA238G1060 Erigeron canadensis HOM05D000016 ORTHO05D000109 7.5e-08 62.0 214 31.3
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 9.8e-08 61.6 271 29.2
FAN09G4445 Fragaria x ananassa HOM05D020475 ORTHO05D022619 9.8e-08 61.6 273 37.7
FAN02G4612 Fragaria x ananassa HOM05D020475 ORTHO05D022619 1.3e-07 61.2 278 37.8
MD09G1241900 Malus domestica HOM05D020475 ORTHO05D010747 1.3e-07 61.2 299 30.8
Potri.017G015700 Populus trichocarpa HOM05D008876 ORTHO05D010747 1.7e-07 60.8 118 37.3
SalBow7G0182 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.7e-07 60.8 150 34.0
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 2.2e-07 60.5 63 49.2
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 2.2e-07 60.5 310 26.1
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 2.2e-07 60.5 239 26.4
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 2.8e-07 60.1 80 43.8
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 3.7e-07 59.7 279 28.7
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 4.9e-07 59.3 221 29.4
AL1G13380 Arabidopsis lyrata HOM05D010571 ORTHO05D012729 6.3e-07 58.9 160 34.4
Gohir.A03G154600 Gossypium hirsutum HOM05D008876 ORTHO05D010747 6.3e-07 58.9 264 37.1
PGR042G1564 Punica granatum HOM05D008876 ORTHO05D010747 8.3e-07 58.5 288 34.4
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.4e-06 57.8 241 28.6
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 1.4e-06 57.8 237 29.1
Ciclev10016200m.g Citrus clementina HOM05D007160 ORTHO05D005331 1.8e-06 57.4 89 42.7
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.8e-06 57.4 292 26.4
TPR.G6423 Trifolium pratense HOM05D008876 ORTHO05D010747 1.8e-06 57.4 282 32.3
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 1.8e-06 57.4 78 44.9
Prupe.3G134900 Prunus persica HOM05D020475 ORTHO05D010747 2.4e-06 57.0 302 36.1
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 4.1e-06 56.2 89 44.9
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.1e-06 56.2 235 27.7
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 5.4e-06 55.8 242 28.5
A08p37220 Brassica napus HOM05D010571 ORTHO05D012729 5.4e-06 55.8 164 36.0
Psat5g273640 Pisum sativum HOM05D008876 ORTHO05D010747 7.0e-06 55.5 285 30.2
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 9.2e-06 55.1 168 30.4


User provided reference genes

Program Settings