Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01428 Davidia involucrata HOM05D000380 ORTHO05D044394 1.8e-69 265.8 135 100.0
Dinv07750 Davidia involucrata HOM05D000380 ORTHO05D002061 9.5e-58 226.9 133 88.7
Dinv26705 Davidia involucrata HOM05D000380 ORTHO05D002061 4.0e-32 141.7 133 64.7
RhsimUnG0206600 Rhododendron simsii HOM05D000380 ORTHO05D002061 2.3e-27 125.9 137 57.7
CSS0045426 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D002061 8.7e-27 124.0 140 59.3
CSS0048575 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D002061 8.7e-27 124.0 140 59.3
CSS0042413 Camellia sinensis var. sinensis HOM05D000380 ORTHO05D002061 2.5e-26 122.5 134 56.7
Eucgr.F03232 Eucalyptus grandis HOM05D000380 ORTHO05D002061 2.5e-26 122.5 131 58.8
vmacro09415 Vaccinium macrocarpon HOM05D000380 ORTHO05D002061 1.3e-25 120.2 143 53.8
Actinidia12606 Actinidia chinensis HOM05D000380 ORTHO05D002061 1.6e-25 119.8 134 58.2
Rhsim06G0212300 Rhododendron simsii HOM05D000380 ORTHO05D002061 1.8e-24 116.3 149 49.7
QL04p068884 Quercus lobata HOM05D000380 ORTHO05D002061 9.0e-24 114.0 132 54.5
Cfa019520 Carpinus fangiana HOM05D000380 ORTHO05D002061 2.6e-23 112.5 134 56.7
Manes.15G098800 Manihot esculenta HOM05D000380 ORTHO05D002061 5.8e-23 111.3 131 56.5
RcHm_v2.0_Chr5g0029381 Rosa chinensis HOM05D000380 ORTHO05D002061 9.9e-23 110.5 133 52.6
Cpa.g.c33489.2 Carica papaya HOM05D000380 ORTHO05D002061 1.7e-22 109.8 128 51.6
MD11G1270400 Malus domestica HOM05D000380 ORTHO05D002061 1.7e-22 109.8 140 50.0
vmacro11974 Vaccinium macrocarpon HOM05D000380 ORTHO05D002061 1.7e-22 109.8 148 49.3
Haze_09251 Corylus avellana HOM05D000380 ORTHO05D002061 4.9e-22 108.2 133 54.9
Sc16g0005500 Simmondsia chinensis HOM05D000380 ORTHO05D002061 4.9e-22 108.2 142 48.6
MD03G1250300 Malus domestica HOM05D000380 ORTHO05D002061 6.4e-22 107.8 138 49.3
Sc16g0007760 Simmondsia chinensis HOM05D000380 ORTHO05D002061 6.4e-22 107.8 142 48.6
TAR626G1337 Trochodendron aralioides HOM05D000380 ORTHO05D002061 6.4e-22 107.8 135 49.6
Thecc.07G134200 Theobroma cacao HOM05D000380 ORTHO05D002061 8.4e-22 107.5 140 53.6
Sc07g0002370 Simmondsia chinensis HOM05D000380 ORTHO05D002061 1.4e-21 106.7 140 48.6
Potri.011G103900 Populus trichocarpa HOM05D000380 ORTHO05D002061 1.9e-21 106.3 131 52.7
Sabra11G0081800 Salix brachista HOM05D000380 ORTHO05D002061 1.9e-21 106.3 131 51.9
MELO3C025673.2 Cucumis melo HOM05D000380 ORTHO05D002061 7.1e-21 104.4 135 49.6
Sabra11G0077000 Salix brachista HOM05D000380 ORTHO05D002061 9.3e-21 104.0 130 50.0
arahy.Tifrunner.gnm1.ann1.YY1VWG Arachis hypogaea HOM05D000380 ORTHO05D002061 1.2e-20 103.6 141 51.1
CsaV3_4G032820 Cucumis sativus L. HOM05D000380 ORTHO05D002061 1.2e-20 103.6 128 49.2
Peaxi162Scf00111g01324 Petunia axillaris HOM05D000380 ORTHO05D002061 1.6e-20 103.2 129 48.8
CAN.G375.52 Capsicum annuum HOM05D000380 ORTHO05D002061 2.1e-20 102.8 131 48.9
Duzib213G0010 Durio zibethinus HOM05D000380 ORTHO05D002061 2.1e-20 102.8 135 51.9
FAN11G3841 Fragaria x ananassa HOM05D000380 ORTHO05D002061 2.7e-20 102.4 134 51.5
FAN25G1895 Fragaria x ananassa HOM05D000380 ORTHO05D002061 2.7e-20 102.4 134 51.5
FAN21G3278 Fragaria x ananassa HOM05D000380 ORTHO05D002061 3.5e-20 102.1 134 51.5
TAR627G1013 Trochodendron aralioides HOM05D000380 ORTHO05D002061 3.5e-20 102.1 135 49.6
Ciclev10018748m.g Citrus clementina HOM05D000380 ORTHO05D002061 4.6e-20 101.7 132 52.3
Potri.001G383600 Populus trichocarpa HOM05D000380 ORTHO05D002061 4.6e-20 101.7 131 51.1
Nitab4.5_0000347g0040 Nicotiana tabacum HOM05D000380 ORTHO05D002061 6.0e-20 101.3 131 49.6
arahy.Tifrunner.gnm1.ann1.E48PAY Arachis hypogaea HOM05D000380 ORTHO05D002061 1.0e-19 100.5 141 51.1
ClCG11G017190 Citrullus lanatus HOM05D000380 ORTHO05D002061 1.0e-19 100.5 128 49.2
Sed0019760 Sechium edule HOM05D000380 ORTHO05D002061 1.0e-19 100.5 131 49.6
Sopen07g030410 Solanum pennellii HOM05D000380 ORTHO05D002061 1.0e-19 100.5 131 48.1
Lalb_Chr01g0006921 Lupinus albus HOM05D000380 ORTHO05D002061 1.8e-19 99.8 139 46.0
Solyc07g062140.3 Solanum lycopersicum HOM05D000380 ORTHO05D002061 1.8e-19 99.8 131 48.1
PGSC0003DMG400007089 Solanum tuberosum HOM05D000380 ORTHO05D002061 1.8e-19 99.8 131 48.1
VMungo1080G1605 Vigna mungo HOM05D000380 ORTHO05D002061 1.8e-19 99.8 135 45.9
FvH4_3g17650 Fragaria vesca HOM05D000380 ORTHO05D002061 2.3e-19 99.4 134 51.5
SGA_v2.0_scaffold4G02151 Striga asiatica HOM05D000380 ORTHO05D002061 2.3e-19 99.4 132 45.5
COL.COLO4_17468 Corchorus olitorius HOM05D000380 ORTHO05D002061 3.0e-19 99.0 133 47.4
Prupe.4G155900 Prunus persica HOM05D000380 ORTHO05D002061 3.0e-19 99.0 134 49.3
FAN16G2305 Fragaria x ananassa HOM05D000380 ORTHO05D002061 3.9e-19 98.6 134 50.7
TWI39G0074 Tripterygium wilfordii HOM05D000380 ORTHO05D002061 5.1e-19 98.2 135 50.4
Gohir.A04G044800 Gossypium hirsutum HOM05D000380 ORTHO05D002061 1.1e-18 97.1 138 50.0
SGA_v2.0_scaffold130G34263 Striga asiatica HOM05D000380 ORTHO05D002061 1.1e-18 97.1 132 45.5
Glyma.15G210100 Glycine max HOM05D000380 ORTHO05D002061 1.5e-18 96.7 132 47.7
Nitab4.5_0001140g0180 Nicotiana tabacum HOM05D000380 ORTHO05D002061 1.5e-18 96.7 131 48.1
Phvul.011G170300 Phaseolus vulgaris HOM05D000380 ORTHO05D002061 1.5e-18 96.7 133 48.1
Ah.06g186520 Amaranthus hybridus HOM05D000380 ORTHO05D002061 1.9e-18 96.3 134 47.8
Nn6g34404 Nelumbo nucifera HOM05D000380 ORTHO05D002061 1.9e-18 96.3 137 47.4
Atru.chr2.1962 Acer truncatum HOM05D000380 ORTHO05D002061 2.5e-18 95.9 132 47.7
Gohir.D05G338300 Gossypium hirsutum HOM05D000380 ORTHO05D002061 2.5e-18 95.9 140 50.0
Phvul.005G076500 Phaseolus vulgaris HOM05D000380 ORTHO05D002061 2.5e-18 95.9 136 41.9
Sabra16G0252700 Salix brachista HOM05D000380 ORTHO05D002061 3.3e-18 95.5 132 48.5
DCAR_017588 Daucus carota HOM05D000380 ORTHO05D002061 4.3e-18 95.1 138 47.8
Gorai.009G362600 Gossypium raimondii HOM05D000380 ORTHO05D002061 7.4e-18 94.4 140 49.3
DCAR_013781 Daucus carota HOM05D000380 ORTHO05D002061 9.6e-18 94.0 136 47.1
CiPaw.11G156300 Carya illinoinensis HOM05D000380 ORTHO05D002061 2.1e-17 92.8 131 48.1
Nn3g20977 Nelumbo nucifera HOM05D000380 ORTHO05D002061 2.1e-17 92.8 136 47.1
Manes.03G079000 Manihot esculenta HOM05D000380 ORTHO05D002061 2.8e-17 92.4 128 48.4
VMungo1127G1136 Vigna mungo HOM05D000380 ORTHO05D002061 3.6e-17 92.0 132 45.5
Lj3g0007787 Lotus japonicus HOM05D000380 ORTHO05D002061 1.1e-16 90.5 129 48.1
Lj3g0025510 Lotus japonicus HOM05D000380 ORTHO05D002061 1.1e-16 90.5 129 48.1
MSTRG.14985 Avicennia marina HOM05D000380 ORTHO05D002061 1.8e-16 89.7 129 46.5
Lj1C823G7 Lonicera japonica HOM05D000380 ORTHO05D002061 3.1e-16 89.0 138 47.1
TWI38G0975 Tripterygium wilfordii HOM05D000380 ORTHO05D002061 3.1e-16 89.0 136 50.7
Lj3g0024113 Lotus japonicus HOM05D000380 ORTHO05D002061 9.0e-16 87.4 137 43.8
Lalb_Chr20g0109161 Lupinus albus HOM05D000380 ORTHO05D002061 1.2e-15 87.0 134 44.0
Cc05_g10670 Coffea canephora HOM05D000380 ORTHO05D002061 1.5e-15 86.7 129 46.5
HanXRQChr13g0389741 Helianthus annuus HOM05D000380 ORTHO05D002061 2.6e-15 85.9 138 41.3
HanXRQChr03g0072811 Helianthus annuus HOM05D000380 ORTHO05D002061 3.4e-15 85.5 135 40.7
Oeu058452.1 Olea europaea HOM05D000380 ORTHO05D002061 4.5e-15 85.1 127 46.5
AUR62013957 Chenopodium quinoa HOM05D000380 ORTHO05D002061 5.8e-15 84.7 133 46.6
AUR62019657 Chenopodium quinoa HOM05D000380 ORTHO05D002061 7.6e-15 84.3 133 45.9
Ca_03920_v3 Cicer arietinum L. HOM05D000380 ORTHO05D002061 7.6e-15 84.3 132 45.5
Ca_03927_v3 Cicer arietinum L. HOM05D000380 ORTHO05D002061 7.6e-15 84.3 132 45.5
Glyma.13G264600 Glycine max HOM05D000380 ORTHO05D002061 7.6e-15 84.3 129 45.0
THA.LOC104808085 Tarenaya hassleriana HOM05D000380 ORTHO05D002061 7.6e-15 84.3 147 42.2
EL10Ac4g08423 Beta vulgaris HOM05D000380 ORTHO05D002061 1.3e-14 83.6 135 46.7
Gohir.D01G038000 Gossypium hirsutum HOM05D000380 ORTHO05D002061 1.3e-14 83.6 138 44.2
Gorai.002G046400 Gossypium raimondii HOM05D000380 ORTHO05D002061 1.3e-14 83.6 138 44.2
ECA236G4691 Erigeron canadensis HOM05D000380 ORTHO05D002061 1.7e-14 83.2 138 40.6
Ah.04g163980 Amaranthus hybridus HOM05D000380 ORTHO05D002061 2.9e-14 82.4 133 39.1
CANSAT56G0787 Cannabis sativa HOM05D000380 ORTHO05D002061 3.8e-14 82.0 130 41.5
Psat4g138000 Pisum sativum HOM05D000380 ORTHO05D002061 6.4e-14 81.3 135 43.7
MBI02_g21200_MAGBIO Magnolia biondii HOM05D000380 ORTHO05D002061 3.2e-13 79.0 140 40.7
TPR.G34998 Trifolium pratense HOM05D000380 ORTHO05D002061 3.2e-13 79.0 133 42.1
Ca_27990_v3 Cicer arietinum L. HOM05D000380 ORTHO05D044394 9.3e-13 77.4 123 43.1
TPR.G16478 Trifolium pratense HOM05D000380 ORTHO05D002061 9.3e-13 77.4 133 40.6
SalBow7G3363 Salvia bowleyana HOM05D000380 ORTHO05D002061 1.6e-12 76.6 127 44.1
unitig_746.g26837 Utricularia gibba HOM05D000380 ORTHO05D002061 1.6e-12 76.6 137 40.9
ECA240G4539 Erigeron canadensis HOM05D000380 ORTHO05D002061 2.7e-12 75.9 134 38.8
Medtr0034s0170 Medicago truncatula HOM05D000380 ORTHO05D002061 3.5e-12 75.5 134 40.3
Aa31LG4G2380 Aethionema arabicum HOM05D000380 ORTHO05D002061 4.6e-12 75.1 156 38.5
Aqoxy4G00184 Aquilegia oxysepala HOM05D000380 ORTHO05D002061 6.0e-12 74.7 136 37.5
Medtr2g073260 Medicago truncatula HOM05D000380 ORTHO05D002061 7.9e-12 74.3 139 38.8
Glyma.12G234200 Glycine max HOM05D000380 ORTHO05D002061 1.8e-11 73.2 131 43.5
Oeu010034.4 Olea europaea HOM05D000380 ORTHO05D002061 2.3e-11 72.8 133 39.1
MSTRG.6693 Avicennia marina HOM05D000380 ORTHO05D002061 3.0e-11 72.4 131 40.5
Lsat_1_v5_gn_7_100120 Lactuca sativa HOM05D000380 ORTHO05D002061 5.1e-11 71.6 144 36.8
Lalb_Chr01g0016301 Lupinus albus HOM05D000380 ORTHO05D002061 6.7e-11 71.2 128 43.0
BcaC03g15819 Brassica carinata HOM05D000380 ORTHO05D002061 8.7e-11 70.9 151 38.4
Lsat_1_v5_gn_9_101701 Lactuca sativa HOM05D000380 ORTHO05D002061 1.9e-10 69.7 143 36.4
HPP92_009094 Vanilla planifolia HOM05D000380 ORTHO05D012598 1.9e-10 69.7 139 34.5
Migut.M00691 Erythranthe guttata HOM05D000380 ORTHO05D002061 2.5e-10 69.3 137 37.2
HanXRQChr11g0331201 Helianthus annuus HOM05D000380 ORTHO05D002061 2.5e-10 69.3 135 40.7
Psat1g006800 Pisum sativum HOM05D000380 ORTHO05D002061 3.3e-10 68.9 126 40.5
AT1G78580 Arabidopsis thaliana HOM05D000380 ORTHO05D002061 4.3e-10 68.6 145 37.2
A02p22220 Brassica napus HOM05D000380 ORTHO05D002061 4.3e-10 68.6 146 39.7
Dinv04555 Davidia involucrata HOM05D000380 ORTHO05D002061 4.3e-10 68.6 134 37.3
Dinv32312 Davidia involucrata HOM05D000380 ORTHO05D002061 4.3e-10 68.6 132 38.6
GSVIVG01014092001 Vitis vinifera HOM05D000380 ORTHO05D002061 4.3e-10 68.6 128 40.6
AUR62019658 Chenopodium quinoa HOM05D000380 ORTHO05D002061 7.4e-10 67.8 131 42.7
C02p35630 Brassica napus HOM05D000380 ORTHO05D002061 9.6e-10 67.4 152 37.5
Cpa.g.sc17.165 Carica papaya HOM05D000380 ORTHO05D002061 9.6e-10 67.4 133 38.3
AUR62013953 Chenopodium quinoa HOM05D000380 ORTHO05D002061 9.6e-10 67.4 135 40.0
BolC2t09579H Brassica oleracea HOM05D000380 ORTHO05D002061 2.8e-09 65.9 152 36.8
BraA02t07227Z Brassica rapa HOM05D000380 ORTHO05D002061 2.8e-09 65.9 146 39.0
Manes.15G116000 Manihot esculenta HOM05D000380 ORTHO05D002061 2.8e-09 65.9 130 36.9
CARHR072070 Cardamine hirsuta HOM05D000380 ORTHO05D002061 3.7e-09 65.5 151 36.4
Carub.0002s2543 Capsella rubella HOM05D000380 ORTHO05D002061 4.8e-09 65.1 146 37.0
TWI53G0732 Tripterygium wilfordii HOM05D000380 ORTHO05D002061 4.8e-09 65.1 136 35.3
Actinidia16760 Actinidia chinensis HOM05D000380 ORTHO05D002061 6.2e-09 64.7 136 36.8
BcaB05g25145 Brassica carinata HOM05D000380 ORTHO05D002061 6.2e-09 64.7 154 37.7
Sp5g33670 Schrenkiella parvula HOM05D000380 ORTHO05D002061 8.2e-09 64.3 155 36.1
Thhalv10018081m.g Eutrema salsugineum HOM05D000380 ORTHO05D002061 1.1e-08 63.9 161 34.8
C06p52480 Brassica napus HOM05D000380 ORTHO05D002061 1.8e-08 63.2 151 36.4
BcaC08g47431 Brassica carinata HOM05D000380 ORTHO05D002061 5.3e-08 61.6 56 62.5
Atru.chr10.1475 Acer truncatum HOM05D000380 ORTHO05D002061 9.0e-08 60.8 136 36.8
A07p43850 Brassica napus HOM05D000380 ORTHO05D002061 9.0e-08 60.8 149 35.6
BraA07t31892Z Brassica rapa HOM05D000380 ORTHO05D002061 9.0e-08 60.8 149 35.6
Ciclev10017787m.g Citrus clementina HOM05D000380 ORTHO05D002061 9.0e-08 60.8 138 34.1
MD10G1270400 Malus domestica HOM05D000380 ORTHO05D002061 9.0e-08 60.8 137 35.0
Migut.M00981 Erythranthe guttata HOM05D000380 ORTHO05D002061 1.2e-07 60.5 131 33.6
PSO541G2580 Papaver somniferum HOM05D000380 ORTHO05D002061 1.2e-07 60.5 138 34.8
PSO675G3597 Papaver somniferum HOM05D000380 ORTHO05D002061 1.2e-07 60.5 138 34.8
SGA_v2.0_scaffold73G24384 Striga asiatica HOM05D000380 ORTHO05D002061 1.2e-07 60.5 124 36.3
BolC6t40267H Brassica oleracea HOM05D000380 ORTHO05D002061 1.5e-07 60.1 151 35.8
Prupe.4G071400 Prunus persica HOM05D000380 ORTHO05D002061 1.5e-07 60.1 137 35.8
QL05p052680 Quercus lobata HOM05D000380 ORTHO05D002061 1.5e-07 60.1 147 35.4
MELO3C002694.2 Cucumis melo HOM05D000380 ORTHO05D002061 2.6e-07 59.3 135 35.6
SEGI_14374 Sequoiadendron giganteum HOM05D000380 ORTHO05D002061 2.6e-07 59.3 139 36.7
ATR0737G035 Amborella trichopoda HOM05D000380 ORTHO05D002061 3.4e-07 58.9 148 33.8
FvH4_3g06590 Fragaria vesca HOM05D000380 ORTHO05D002061 3.4e-07 58.9 134 34.3
FAN21G1006 Fragaria x ananassa HOM05D000380 ORTHO05D002061 3.4e-07 58.9 134 34.3
RcHm_v2.0_Chr5g0012561 Rosa chinensis HOM05D000380 ORTHO05D002061 3.4e-07 58.9 134 34.3
SHI27576 Sapria himalayana HOM05D000380 ORTHO05D002061 3.4e-07 58.9 126 36.5
Sc05g0006710 Simmondsia chinensis HOM05D000380 ORTHO05D002061 3.4e-07 58.9 126 39.7
Lsat_1_v5_gn_6_77481 Lactuca sativa HOM05D000380 ORTHO05D002061 4.5e-07 58.5 129 38.0
GSVIVG01021313001 Vitis vinifera HOM05D000380 ORTHO05D002061 4.5e-07 58.5 126 34.9
FAN11G3442 Fragaria x ananassa HOM05D000380 ORTHO05D002061 5.8e-07 58.2 134 34.3
FAN25G2197 Fragaria x ananassa HOM05D000380 ORTHO05D002061 5.8e-07 58.2 134 34.3
TWI73G0255 Tripterygium wilfordii HOM05D000380 ORTHO05D002061 5.8e-07 58.2 131 32.8
Migut.H02026 Erythranthe guttata HOM05D000380 ORTHO05D002061 7.6e-07 57.8 154 33.1
FAN16G3053 Fragaria x ananassa HOM05D000380 ORTHO05D002061 7.6e-07 57.8 134 33.6
Cfa001056 Carpinus fangiana HOM05D000380 ORTHO05D002061 1.0e-06 57.4 133 34.6
CDE08G1270 Ceratophyllum demersum HOM05D000380 ORTHO05D002061 1.3e-06 57.0 144 31.9
Glyma.05G163600 Glycine max HOM05D000380 ORTHO05D002061 1.3e-06 57.0 132 35.6
MD03G1249500 Malus domestica HOM05D000380 ORTHO05D012598 1.3e-06 57.0 72 48.6
Haze_05460 Corylus avellana HOM05D000380 ORTHO05D002061 1.7e-06 56.6 137 34.3
CDE02G2555 Ceratophyllum demersum HOM05D000380 ORTHO05D002061 2.2e-06 56.2 144 32.6
CsaV3_1G032890 Cucumis sativus L. HOM05D000380 ORTHO05D002061 2.2e-06 56.2 151 33.1
Cc09_g10130 Coffea canephora HOM05D000380 ORTHO05D002061 2.9e-06 55.8 134 33.6
Glyma.08G120800 Glycine max HOM05D000380 ORTHO05D002061 2.9e-06 55.8 135 35.6
SalBow8G3352 Salvia bowleyana HOM05D000380 ORTHO05D002061 2.9e-06 55.8 129 33.3
Duzib160G0359 Durio zibethinus HOM05D000380 ORTHO05D002061 4.9e-06 55.1 139 33.8
Nitab4.5_0003913g0050 Nicotiana tabacum HOM05D000380 ORTHO05D002061 4.9e-06 55.1 144 34.7
SMO348G0092 Selaginella moellendorffii HOM05D000380 ORTHO05D002061 4.9e-06 55.1 129 34.9
Duzib235G0627 Durio zibethinus HOM05D000380 ORTHO05D002061 8.4e-06 54.3 140 31.4


User provided reference genes

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