Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 2.7e-118 428.7 221 100.0
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.0e-56 224.2 260 62.3
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.1e-34 151.0 255 46.7
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.0e-32 142.9 253 47.4
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.3e-31 139.4 253 47.0
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 4.3e-31 139.0 261 44.8
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 2.4e-26 123.2 259 45.6
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 3.2e-26 122.9 238 47.1
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 3.5e-25 119.4 267 43.8
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.6e-25 119.0 241 42.3
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.3e-24 117.5 269 42.0
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.1e-23 114.4 270 41.1
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.1e-23 114.4 270 41.5
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.3e-23 112.8 273 40.3
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 8.9e-21 104.8 232 42.2
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 1.7e-19 100.5 146 52.7
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 1.9e-18 97.1 255 41.6
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.1e-17 93.6 217 42.4
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 6.0e-17 92.0 240 39.2
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 3.9e-16 89.4 231 39.4
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.6e-16 88.6 271 36.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 8.6e-16 88.2 228 37.7
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 4.3e-15 85.9 214 40.7
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 7.3e-15 85.1 215 41.9
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.2e-14 84.3 251 39.8
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 1.2e-14 84.3 200 43.5
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.6e-14 84.0 231 39.0
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.6e-14 84.0 273 35.5
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.8e-14 83.2 256 36.7
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.8e-14 83.2 256 36.7
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 3.6e-14 82.8 284 34.2
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 6.2e-14 82.0 231 39.8
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 1.1e-13 81.3 307 32.6
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 3.1e-13 79.7 236 36.9
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 4.0e-13 79.3 242 36.8
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 8.9e-13 78.2 248 38.3
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 8.9e-13 78.2 248 38.3
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 8.9e-13 78.2 140 46.4
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.0e-12 77.0 277 34.3
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.0e-12 77.0 277 34.3
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 2.6e-12 76.6 249 35.3
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 2.6e-12 76.6 246 37.0
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 5.8e-12 75.5 271 37.3
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.3e-11 74.3 277 33.6
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.3e-11 74.3 166 37.3
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.7e-11 73.9 238 36.1
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.7e-11 73.9 240 36.7
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 2.2e-11 73.6 247 35.6
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.2e-11 73.6 276 34.8
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 3.8e-11 72.8 196 36.7
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 4.9e-11 72.4 252 34.1
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 4.9e-11 72.4 128 46.9
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.4e-10 70.9 233 33.5
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 3.2e-10 69.7 244 35.7
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.2e-10 69.7 199 36.7
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 3.2e-10 69.7 228 37.7
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 3.2e-10 69.7 252 34.5
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.4e-10 68.9 251 33.9
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.1e-09 67.0 239 34.3
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 2.7e-09 66.6 215 36.3
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 2.7e-09 66.6 291 33.3
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.7e-09 66.6 241 35.7
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 3.5e-09 66.2 250 32.0
VMungo1127G1338 Vigna mungo HOM05D010177 ORTHO05D003109 6.0e-09 65.5 229 36.2
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 7.8e-09 65.1 255 33.3
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 7.8e-09 65.1 252 36.5
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.0e-08 64.7 226 33.6
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 1.0e-08 64.7 230 36.1
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.3e-08 64.3 258 35.3
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.7e-08 63.9 257 35.0
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.7e-08 63.9 188 37.2
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.3e-08 63.5 258 34.5
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 3.0e-08 63.2 263 32.7
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 3.0e-08 63.2 246 35.4
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.6e-08 62.0 220 37.7
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 8.6e-08 61.6 252 36.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 8.6e-08 61.6 262 31.3
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 1.1e-07 61.2 232 38.8
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.5e-07 60.8 244 32.4
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 1.9e-07 60.5 220 30.0
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.9e-07 60.5 277 34.3
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 3.3e-07 59.7 220 36.8
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 3.3e-07 59.7 188 37.8
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 3.3e-07 59.7 252 32.9
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 5.6e-07 58.9 272 33.8
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 7.3e-07 58.5 238 31.9
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 7.3e-07 58.5 253 32.8
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 9.6e-07 58.2 218 35.8
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 2.1e-06 57.0 186 36.6
DCAR_012992 Daucus carota HOM05D009304 ORTHO05D003109 2.8e-06 56.6 228 36.0
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 3.6e-06 56.2 262 34.4
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 3.6e-06 56.2 236 33.1
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.7e-06 55.8 247 34.4
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 6.2e-06 55.5 277 32.9
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 8.1e-06 55.1 237 34.2
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 8.1e-06 55.1 257 34.2
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 8.1e-06 55.1 257 30.4


User provided reference genes

Program Settings