Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 9.2e-190 666.8 347 100.0
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 1.9e-89 333.6 210 83.3
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 3.3e-86 322.8 211 81.0
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 4.3e-86 322.4 211 80.6
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 2.1e-85 320.1 211 81.5
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 3.6e-85 319.3 211 79.1
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 8.9e-84 314.7 211 78.7
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 4.1e-81 305.8 211 75.4
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 7.1e-81 305.1 211 76.3
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 1.6e-80 303.9 211 75.8
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 2.1e-80 303.5 209 78.0
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 1.0e-79 301.2 211 74.9
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.3e-79 300.8 216 74.5
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 1.7e-79 300.4 211 76.8
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 5.1e-79 298.9 211 74.4
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 5.1e-79 298.9 211 74.4
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 6.6e-79 298.5 211 74.4
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 8.6e-79 298.1 224 71.9
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.9e-78 297.0 217 73.7
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 2.5e-78 296.6 211 75.4
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 3.3e-78 296.2 223 73.1
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 5.6e-78 295.4 211 75.8
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 5.6e-78 295.4 210 74.3
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 1.2e-77 294.3 210 72.9
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 4.7e-77 292.4 212 74.5
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 6.2e-77 292.0 211 73.0
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 6.2e-77 292.0 210 72.4
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 1.8e-76 290.4 212 73.6
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.3e-76 290.0 208 74.0
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 4.0e-76 289.3 228 68.9
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 5.2e-76 288.9 208 75.0
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 1.5e-75 287.3 210 71.4
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 2.6e-75 286.6 212 73.1
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 3.4e-75 286.2 211 69.7
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 3.4e-75 286.2 211 71.6
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 7.6e-75 285.0 211 71.6
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 7.6e-75 285.0 211 72.5
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 9.9e-75 284.6 210 72.9
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 1.3e-74 284.3 208 72.1
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 4.9e-74 282.3 211 72.5
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 6.4e-74 282.0 210 70.0
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 6.4e-74 282.0 210 70.0
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 6.4e-74 282.0 210 70.5
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 6.4e-74 282.0 210 69.5
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 8.3e-74 281.6 225 67.6
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 1.1e-73 281.2 210 70.0
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.9e-73 280.4 210 69.5
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 1.9e-73 280.4 251 63.7
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 2.4e-73 280.0 211 67.8
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 3.2e-73 279.6 211 69.7
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 3.2e-73 279.6 210 70.0
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 4.1e-73 279.3 211 70.6
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 4.1e-73 279.3 212 70.8
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 5.4e-73 278.9 210 69.5
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 7.1e-73 278.5 210 70.5
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 7.1e-73 278.5 211 69.7
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 1.2e-72 277.7 211 68.2
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.2e-72 277.7 211 68.7
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.6e-72 277.3 211 70.1
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 2.1e-72 276.9 211 68.7
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 2.7e-72 276.6 210 69.5
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 4.6e-72 275.8 211 65.4
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 4.6e-72 275.8 211 68.2
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 1.3e-71 274.2 211 68.7
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 2.3e-71 273.5 210 66.7
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 3.0e-71 273.1 210 66.7
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 3.0e-71 273.1 211 69.7
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 1.9e-70 270.4 212 67.9
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 3.3e-70 269.6 250 63.2
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 5.6e-70 268.9 241 63.5
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 6.2e-69 265.4 211 68.7
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 1.1e-68 264.6 215 68.8
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 4.4e-67 259.2 188 73.9
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 7.6e-67 258.5 194 71.1
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.3e-66 257.7 207 65.7
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 4.9e-66 255.8 175 75.4
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 7.1e-65 251.9 177 73.4
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 3.5e-64 249.6 178 74.2
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.1e-62 244.6 212 60.8
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.1e-62 244.6 210 63.3
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.9e-62 243.8 232 61.2
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 1.6e-61 240.7 211 62.6
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 1.1e-60 238.0 212 65.6
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.4e-60 237.7 214 63.6
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.1e-60 236.5 222 62.6
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.1e-60 236.5 224 59.8
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 5.3e-60 235.7 224 59.8
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.2e-59 234.6 224 60.7
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 2.0e-59 233.8 212 58.0
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 4.4e-59 232.6 234 60.7
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 6.0e-56 222.2 145 80.7
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 6.0e-56 222.2 211 61.1
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 3.0e-55 219.9 150 77.3
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 2.1e-53 213.8 223 56.5
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 2.8e-53 213.4 210 61.4
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 1.9e-46 190.7 145 69.7
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 7.4e-46 188.7 134 73.9
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 2.2e-42 177.2 214 45.8
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 3.5e-40 169.9 190 48.9
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 6.0e-40 169.1 119 74.8
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 5.1e-39 166.0 119 73.9
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.2e-35 154.8 168 54.8
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 1.2e-35 154.8 231 45.5
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 4.5e-35 152.9 124 63.7
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 3.5e-32 143.3 208 39.9
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 3.3e-30 136.7 206 41.3
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 4.3e-30 136.3 212 45.3
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 1.3e-29 134.8 88 80.7
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 8.2e-29 132.1 119 58.8
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.3e-23 114.0 188 43.6
Dinv16056 Davidia involucrata HOM05D000780 ORTHO05D009033 3.9e-23 113.2 68 79.4
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.5e-22 111.3 116 51.7
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 5.7e-22 109.4 89 61.8
Dinv18706 Davidia involucrata HOM05D000780 ORTHO05D182820 3.1e-20 103.6 66 74.2
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 1.0e-15 88.6 62 75.8
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 3.9e-15 86.7 62 74.2
Dinv41232 Davidia involucrata HOM05D001330 ORTHO05D001201 1.7e-13 81.3 42 95.2
Thecc.09G176100 Theobroma cacao HOM05D001330 ORTHO05D001201 3.1e-12 77.0 42 88.1
CSS0042222 Camellia sinensis var. sinensis HOM05D001330 ORTHO05D001201 4.1e-12 76.6 42 83.3
CSS0015687 Camellia sinensis var. sinensis HOM05D001330 ORTHO05D001201 1.5e-11 74.7 42 81.0
Dinv42712 Davidia involucrata HOM05D001330 ORTHO05D001201 1.5e-11 74.7 42 83.3
Dinv43389 Davidia involucrata HOM05D001330 ORTHO05D001201 1.5e-11 74.7 42 83.3
Peaxi162Scf00231g01221 Petunia axillaris HOM05D001330 ORTHO05D001201 2.0e-11 74.3 41 80.5
Nitab4.5_0000055g0300 Nicotiana tabacum HOM05D001330 ORTHO05D001201 1.7e-10 71.2 42 71.4
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 2.9e-10 70.5 77 48.1
Gohir.A03G022400 Gossypium hirsutum HOM05D001330 ORTHO05D001201 3.8e-10 70.1 42 73.8
PGSC0003DMG400004097 Solanum tuberosum HOM05D001330 ORTHO05D001201 3.8e-10 70.1 49 67.3
Nitab4.5_0006249g0010 Nicotiana tabacum HOM05D001330 ORTHO05D001201 8.5e-10 68.9 42 73.8
Actinidia38630 Actinidia chinensis HOM05D001330 ORTHO05D001201 1.1e-09 68.6 42 73.8
CANSAT11G1652 Cannabis sativa HOM05D001330 ORTHO05D001201 1.9e-09 67.8 42 73.8
CANSAT11G1916 Cannabis sativa HOM05D001330 ORTHO05D001201 1.9e-09 67.8 42 73.8
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.9e-09 67.8 116 41.4
TAR636G1852 Trochodendron aralioides HOM05D001330 ORTHO05D001201 1.9e-09 67.8 41 75.6
Gorai.003G153700 Gossypium raimondii HOM05D001330 ORTHO05D001201 2.5e-09 67.4 42 71.4
Ciclev10009532m.g Citrus clementina HOM05D001330 ORTHO05D001201 4.2e-09 66.6 42 76.2
Gohir.D03G146300 Gossypium hirsutum HOM05D001330 ORTHO05D001201 5.5e-09 66.2 42 69.0
GSVIVG01029221001 Vitis vinifera HOM05D001330 ORTHO05D001201 7.2e-09 65.9 41 73.2
Solyc07g017950.3 Solanum lycopersicum HOM05D001330 ORTHO05D001201 9.4e-09 65.5 49 61.2
Prupe.1G084500 Prunus persica HOM05D001330 ORTHO05D001201 1.6e-08 64.7 42 69.0
RcHm_v2.0_Chr4g0401741 Rosa chinensis HOM05D001330 ORTHO05D001201 8.0e-08 62.4 42 69.0
Sopen07g006810 Solanum pennellii HOM05D001330 ORTHO05D001201 8.0e-08 62.4 43 67.4
Cc06_g13150 Coffea canephora HOM05D001330 ORTHO05D001201 1.0e-07 62.0 41 68.3
Nn1g05779 Nelumbo nucifera HOM05D001330 ORTHO05D001201 1.4e-07 61.6 41 70.7
Atru.chr7.595 Acer truncatum HOM05D001330 ORTHO05D001201 1.8e-07 61.2 42 66.7
Haze_22085 Corylus avellana HOM05D001330 ORTHO05D001201 2.3e-07 60.8 42 73.8
COL.COLO4_37735 Corchorus olitorius HOM05D001330 ORTHO05D001201 3.0e-07 60.5 44 70.5
FAN07G0364 Fragaria x ananassa HOM05D001330 ORTHO05D001201 4.0e-07 60.1 42 66.7
FAN22G1028 Fragaria x ananassa HOM05D001330 ORTHO05D001201 4.0e-07 60.1 42 66.7
Cpa.g.sc1021.2 Carica papaya HOM05D001330 ORTHO05D001201 5.2e-07 59.7 42 66.7
FAN17G0873 Fragaria x ananassa HOM05D001330 ORTHO05D001201 5.2e-07 59.7 41 68.3
Manes.06G023400 Manihot esculenta HOM05D001330 ORTHO05D001201 5.2e-07 59.7 43 65.1
HanXRQChr10g0308491 Helianthus annuus HOM05D001330 ORTHO05D001201 6.7e-07 59.3 42 66.7
THA.LOC104803942 Tarenaya hassleriana HOM05D001330 ORTHO05D001201 8.8e-07 58.9 40 70.0
CiPaw.07G193000 Carya illinoinensis HOM05D001330 ORTHO05D001201 1.5e-06 58.2 42 66.7
Glyma.13G097100 Glycine max HOM05D001330 ORTHO05D001201 2.0e-06 57.8 42 64.3
Medtr4g127870 Medicago truncatula HOM05D001330 ORTHO05D001201 2.0e-06 57.8 43 69.8
Actinidia17315 Actinidia chinensis HOM05D001330 ORTHO05D001201 3.3e-06 57.0 45 64.4
Aqoxy7G03027 Aquilegia oxysepala HOM05D001330 ORTHO05D001201 3.3e-06 57.0 43 62.8
HanXRQChr12g0365931 Helianthus annuus HOM05D001330 ORTHO05D001201 4.4e-06 56.6 42 64.3
MD04G1188500 Malus domestica HOM05D001330 ORTHO05D001201 4.4e-06 56.6 42 64.3
FAN16G0199 Fragaria x ananassa HOM05D000780 ORTHO05D210745 9.7e-06 55.5 67 41.8
MBI16_g31782_MAGBIO Magnolia biondii HOM05D001330 ORTHO05D001201 9.7e-06 55.5 37 64.9
QL02p097931 Quercus lobata HOM05D001330 ORTHO05D001201 9.7e-06 55.5 43 62.8


User provided reference genes

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