Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 1.6e-42 175.6 86 100.0
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 3.9e-33 144.4 78 89.7
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 4.5e-13 77.8 54 75.9
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 4.5e-13 77.8 62 66.1
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 5.9e-13 77.4 70 58.6
Dinv44658 Davidia involucrata HOM05D004634 ORTHO05D005502 5.9e-13 77.4 41 90.2
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 5.9e-13 77.4 65 66.2
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.9e-12 75.1 52 76.9
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 2.9e-12 75.1 52 75.0
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 5.0e-12 74.3 60 66.7
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 5.0e-12 74.3 52 75.0
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 5.0e-12 74.3 70 57.1
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 5.0e-12 74.3 52 75.0
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 6.6e-12 73.9 78 56.4
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 8.6e-12 73.6 52 75.0
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 8.6e-12 73.6 52 73.1
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 8.6e-12 73.6 52 75.0
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 8.6e-12 73.6 54 72.2
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 8.6e-12 73.6 69 56.5
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.1e-11 73.2 52 75.0
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 1.5e-11 72.8 55 69.1
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.5e-11 72.8 62 62.9
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-11 72.8 62 62.9
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-11 72.8 62 62.9
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.5e-11 72.8 62 62.9
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.5e-11 72.8 52 71.2
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 1.5e-11 72.8 69 60.9
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.5e-11 72.8 69 60.9
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.9e-11 72.4 51 74.5
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 1.9e-11 72.4 54 70.4
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 1.9e-11 72.4 70 60.0
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.9e-11 72.4 60 61.7
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 2.5e-11 72.0 62 61.3
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 2.5e-11 72.0 64 64.1
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 2.5e-11 72.0 51 74.5
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.5e-11 72.0 80 52.5
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 2.5e-11 72.0 69 59.4
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 3.3e-11 71.6 54 72.2
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 3.3e-11 71.6 58 70.7
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 3.3e-11 71.6 56 69.6
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 3.3e-11 71.6 71 56.3
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 4.2e-11 71.2 57 63.2
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 5.5e-11 70.9 58 69.0
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 5.5e-11 70.9 65 61.5
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 5.5e-11 70.9 73 56.2
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 5.5e-11 70.9 51 74.5
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 5.5e-11 70.9 51 72.5
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 5.5e-11 70.9 51 72.5
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 7.2e-11 70.5 52 73.1
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 7.2e-11 70.5 56 69.6
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 9.5e-11 70.1 64 62.5
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 9.5e-11 70.1 54 68.5
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.2e-10 69.7 59 62.7
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.2e-10 69.7 59 66.1
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.2e-10 69.7 52 71.2
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.2e-10 69.7 62 59.7
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.2e-10 69.7 62 59.7
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.2e-10 69.7 62 59.7
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.2e-10 69.7 51 74.5
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.2e-10 69.7 52 69.2
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.6e-10 69.3 69 56.5
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.6e-10 69.3 58 67.2
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.6e-10 69.3 99 43.4
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.6e-10 69.3 54 66.7
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.1e-10 68.9 59 61.0
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 2.1e-10 68.9 52 69.2
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 2.1e-10 68.9 52 69.2
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 2.8e-10 68.6 52 69.2
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 2.8e-10 68.6 62 59.7
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.8e-10 68.6 61 60.7
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 2.8e-10 68.6 54 68.5
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 3.6e-10 68.2 51 70.6
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 3.6e-10 68.2 53 71.7
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.7e-10 67.8 52 67.3
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 4.7e-10 67.8 52 67.3
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 4.7e-10 67.8 52 65.4
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 6.1e-10 67.4 80 53.8
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 6.1e-10 67.4 51 72.5
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 6.1e-10 67.4 51 72.5
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 6.1e-10 67.4 52 67.3
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 6.1e-10 67.4 56 67.9
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 8.0e-10 67.0 58 65.5
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 8.0e-10 67.0 53 71.7
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 8.0e-10 67.0 52 65.4
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 8.0e-10 67.0 56 62.5
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 1.0e-09 66.6 56 62.5
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.0e-09 66.6 54 64.8
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 1.4e-09 66.2 52 67.3
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.4e-09 66.2 51 66.7
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.4e-09 66.2 51 68.6
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 1.8e-09 65.9 51 68.6
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.8e-09 65.9 51 68.6
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.8e-09 65.9 51 68.6
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.8e-09 65.9 51 68.6
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.3e-09 65.5 53 69.8
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.3e-09 65.5 51 68.6
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 5.2e-09 64.3 54 63.0
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 6.8e-09 63.9 51 62.7
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.2e-08 63.2 51 66.7
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.2e-08 63.2 54 63.0
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 1.2e-08 63.2 51 64.7
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.2e-08 63.2 53 67.9
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.5e-08 62.8 80 51.2
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 3.4e-08 61.6 55 65.5
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 5.7e-08 60.8 51 64.7
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 5.7e-08 60.8 51 70.6
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.3e-07 59.7 54 61.1
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.3e-07 59.7 54 61.1
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.7e-07 59.3 51 68.6
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 1.7e-07 59.3 43 69.8
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 2.2e-07 58.9 51 68.6
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.7e-07 58.2 51 64.7
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 3.7e-07 58.2 51 64.7
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 4.9e-07 57.8 51 64.7
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 4.9e-07 57.8 51 62.7
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 4.9e-07 57.8 51 62.7
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 4.9e-07 57.8 49 65.3
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 6.3e-07 57.4 51 62.7
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 8.3e-07 57.0 51 62.7
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 8.3e-07 57.0 51 62.7
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 1.1e-06 56.6 49 63.3
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.1e-06 56.6 49 63.3
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 1.1e-06 56.6 49 63.3
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 1.1e-06 56.6 59 47.5
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.4e-06 56.2 51 56.9
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 1.8e-06 55.8 82 46.3
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 2.4e-06 55.5 41 68.3
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 4.1e-06 54.7 41 70.7
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 5.4e-06 54.3 41 68.3
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 5.4e-06 54.3 52 50.0


User provided reference genes

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