Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.0e-102 375.9 217 100.0
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 6.8e-82 307.8 182 98.9
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.8e-45 186.8 187 66.8
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.9e-44 183.3 186 56.5
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 9.9e-41 171.0 185 67.6
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.2e-40 169.9 170 58.2
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.9e-40 169.5 185 57.8
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.1e-39 167.5 186 53.2
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.1e-38 163.3 192 52.1
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 4.6e-38 162.2 186 62.4
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 7.9e-38 161.4 183 48.6
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 6.7e-37 158.3 186 55.9
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.7e-37 158.3 160 66.2
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.1e-36 157.5 184 55.4
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 9.6e-36 154.5 178 52.2
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.1e-35 153.3 188 58.0
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 6.2e-35 151.8 201 53.7
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 8.1e-35 151.4 172 60.5
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.1e-34 151.0 182 47.8
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.2e-32 143.3 188 55.3
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 4.9e-32 142.1 182 59.9
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.5e-31 139.8 180 59.4
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.2e-31 139.4 186 46.8
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 4.2e-31 139.0 177 54.8
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 5.5e-31 138.7 185 44.9
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 5.5e-31 138.7 177 54.2
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 7.1e-31 138.3 177 55.4
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 9.3e-31 137.9 180 57.8
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 9.3e-31 137.9 173 47.4
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 9.3e-31 137.9 163 57.7
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.2e-30 137.5 186 45.7
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.6e-30 137.1 186 50.0
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.1e-30 136.7 185 46.5
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 2.7e-30 136.3 181 48.6
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 7.9e-30 134.8 190 54.7
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.0e-29 134.4 162 49.4
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 1.3e-29 134.0 179 46.9
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.8e-29 133.7 179 45.3
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.0e-29 132.9 184 48.9
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.9e-29 132.5 186 49.5
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.1e-28 131.0 173 48.0
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.9e-28 130.2 162 48.1
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.9e-28 130.2 192 47.4
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.3e-28 129.0 186 42.5
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 7.4e-28 128.3 179 55.9
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 7.4e-28 128.3 179 53.6
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.3e-27 127.5 159 50.9
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.8e-27 126.3 179 54.2
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 3.7e-27 125.9 192 46.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.4e-26 124.0 186 43.5
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 1.4e-26 124.0 185 49.7
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 3.1e-26 122.9 181 49.2
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.1e-26 122.9 192 44.3
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 4.1e-26 122.5 162 51.9
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 4.1e-26 122.5 179 52.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 9.0e-26 121.3 181 48.6
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.5e-25 120.6 173 43.4
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 3.4e-25 119.4 170 50.6
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.4e-25 119.4 173 43.4
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.4e-25 119.4 186 41.9
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 4.5e-25 119.0 179 47.5
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 4.5e-25 119.0 186 44.1
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.5e-25 119.0 186 44.1
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.5e-25 119.0 104 58.7
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.5e-25 119.0 108 58.3
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.5e-25 119.0 108 58.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 1.0e-24 117.9 186 44.1
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.7e-24 117.1 179 53.1
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.9e-24 116.3 186 43.5
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 3.8e-24 115.9 179 52.5
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.2e-23 112.5 186 44.1
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 5.5e-23 112.1 186 42.5
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.3e-23 111.3 186 41.9
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.8e-21 107.1 186 52.2
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 2.3e-21 106.7 179 49.2
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 5.1e-21 105.5 165 46.1
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 6.7e-21 105.1 180 51.7
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.9e-20 103.6 157 40.8
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 3.3e-20 102.8 82 63.4
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.3e-19 100.9 179 40.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.8e-19 99.8 153 44.4
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 6.3e-19 98.6 187 39.6
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 1.2e-17 94.4 183 45.4
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 7.7e-17 91.7 163 54.6
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.7e-16 90.5 189 43.4
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 8.5e-16 88.2 152 41.4
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.9e-15 87.0 149 41.6
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 4.2e-15 85.9 188 36.7
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 5.5e-15 85.5 107 51.4
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 9.4e-15 84.7 178 37.1
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 2.7e-14 83.2 188 35.6
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 3.6e-14 82.8 92 55.4
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.6e-14 82.8 92 55.4
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.8e-13 80.5 184 46.2
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 3.0e-13 79.7 185 35.1
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 3.9e-13 79.3 188 39.9
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 3.9e-13 79.3 146 44.5
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 5.1e-13 79.0 187 40.1
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 5.1e-13 79.0 150 46.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.7e-13 78.6 187 35.8
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 6.7e-13 78.6 99 45.5
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 8.8e-13 78.2 134 43.3
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 8.8e-13 78.2 102 45.1
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 8.8e-13 78.2 112 47.3
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-12 77.8 148 42.6
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.1e-12 77.8 67 59.7
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.5e-12 77.4 112 49.1
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 1.7e-11 73.9 61 60.7
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.4e-10 70.1 113 45.1
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.6e-09 66.6 188 34.0
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 7.7e-09 65.1 119 42.9
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 1.0e-08 64.7 183 41.0
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.7e-08 63.9 101 38.6
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.7e-08 63.9 101 38.6
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 5.0e-08 62.4 55 54.5
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 6.5e-08 62.0 55 56.4
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 8.5e-08 61.6 64 48.4
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.1e-07 61.2 57 49.1
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 4.2e-07 59.3 195 30.3
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 1.2e-06 57.8 55 58.2


User provided reference genes

Program Settings