Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00940 Davidia involucrata HOM05D000011 ORTHO05D000018 2.7e-32 141.4 70 100.0
Dinv03476 Davidia involucrata HOM05D000052 ORTHO05D000046 6.9e-20 100.1 66 80.3
Dinv03481 Davidia involucrata HOM05D000011 ORTHO05D000018 1.5e-14 82.4 66 72.7
QL05p061166 Quercus lobata HOM05D000041 ORTHO05D004120 5.3e-12 73.9 57 63.2
Dinv29816 Davidia involucrata HOM05D000011 ORTHO05D000018 9.1e-12 73.2 57 61.4
QL05p061584 Quercus lobata HOM05D000041 ORTHO05D004120 2.0e-11 72.0 56 64.3
CSS0013725 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.0e-10 69.7 56 58.9
COL.COLO4_08983 Corchorus olitorius HOM05D000011 ORTHO05D000018 1.7e-10 68.9 59 61.0
QL05p061062 Quercus lobata HOM05D000011 ORTHO05D000018 2.2e-10 68.6 60 56.7
QL05p061342 Quercus lobata HOM05D000011 ORTHO05D000018 2.2e-10 68.6 60 56.7
GSVIVG01032825001 Vitis vinifera HOM05D000011 ORTHO05D000018 2.2e-10 68.6 59 59.3
Duzib138G0602 Durio zibethinus HOM05D000011 ORTHO05D000018 5.0e-10 67.4 58 55.2
Gohir.A11G159100 Gossypium hirsutum HOM05D000011 ORTHO05D000018 6.5e-10 67.0 59 54.2
Gohir.D11G165000 Gossypium hirsutum HOM05D000011 ORTHO05D000018 6.5e-10 67.0 59 54.2
Dinv27077 Davidia involucrata HOM05D000011 ORTHO05D000018 8.5e-10 66.6 59 62.7
Dinv29833 Davidia involucrata HOM05D000011 ORTHO05D000018 8.5e-10 66.6 64 64.1
Gohir.A01G062701 Gossypium hirsutum HOM05D000011 ORTHO05D000018 8.5e-10 66.6 59 55.9
Dinv29756 Davidia involucrata HOM05D000011 ORTHO05D000018 1.5e-09 65.9 57 59.6
Gorai.007G175800 Gossypium raimondii HOM05D000011 ORTHO05D000018 1.5e-09 65.9 59 52.5
Thecc.04G103200 Theobroma cacao HOM05D000011 ORTHO05D000018 1.5e-09 65.9 59 55.9
Hma1.2p1_3340F.1_g335410 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 2.5e-09 65.1 60 58.3
Hma1.2p1_3410F.1_g335880 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 2.5e-09 65.1 47 68.1
CiPaw.04G053100 Carya illinoinensis HOM05D000011 ORTHO05D000018 3.2e-09 64.7 56 60.7
Gohir.D11G307003 Gossypium hirsutum HOM05D000011 ORTHO05D000018 4.2e-09 64.3 60 51.7
TAR376G0423 Trochodendron aralioides HOM05D000011 ORTHO05D000018 4.2e-09 64.3 59 52.5
TAR376G0826 Trochodendron aralioides HOM05D000011 ORTHO05D000018 4.2e-09 64.3 59 52.5
CSS0044250 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.2e-09 63.5 56 55.4
Dinv29835 Davidia involucrata HOM05D000011 ORTHO05D000018 7.2e-09 63.5 60 53.3
Gohir.A01G062900 Gossypium hirsutum HOM05D000011 ORTHO05D000018 9.4e-09 63.2 59 52.5
Gohir.A11G286500 Gossypium hirsutum HOM05D000011 ORTHO05D000018 9.4e-09 63.2 60 51.7
Rhsim11G0186600 Rhododendron simsii HOM05D000011 ORTHO05D000018 9.4e-09 63.2 56 55.4
Dinv01427 Davidia involucrata HOM05D000052 ORTHO05D000046 1.2e-08 62.8 43 76.7
Rhsim11G0186800 Rhododendron simsii HOM05D000011 ORTHO05D000018 1.6e-08 62.4 56 55.4
CSS0007688 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.1e-08 62.0 56 53.6
Gohir.D01G049300 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.1e-08 62.0 59 50.8
Gohir.D11G307100 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.1e-08 62.0 60 50.0
Gorai.002G069200 Gossypium raimondii HOM05D000011 ORTHO05D000018 2.1e-08 62.0 59 50.8
Gorai.007G324200 Gossypium raimondii HOM05D000011 ORTHO05D000018 2.7e-08 61.6 60 50.0
Gorai.007G324400 Gossypium raimondii HOM05D000011 ORTHO05D000018 2.7e-08 61.6 60 50.0
Hma1.2p1_0112F.1_g054350 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 2.7e-08 61.6 57 54.4
VMungo1383G1916 Vigna mungo HOM05D000011 ORTHO05D000018 2.7e-08 61.6 55 52.7
Gohir.D11G299100 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.6e-08 61.2 60 50.0
Gohir.D11G299250 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.6e-08 61.2 60 50.0
Gohir.D11G307200 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.6e-08 61.2 60 50.0
Gorai.007G324300 Gossypium raimondii HOM05D000011 ORTHO05D000018 3.6e-08 61.2 60 50.0
CSS0040702 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.7e-08 60.8 59 52.5
Medtr7g015770 Medicago truncatula HOM05D000011 ORTHO05D000018 4.7e-08 60.8 50 60.0
Dinv27099 Davidia involucrata HOM05D000011 ORTHO05D000018 6.1e-08 60.5 60 58.3
Nn5g27868 Nelumbo nucifera HOM05D000011 ORTHO05D000018 6.1e-08 60.5 59 54.2
PGSC0003DMG400029344 Solanum tuberosum HOM05D000011 ORTHO05D000018 6.1e-08 60.5 55 52.7
Gorai.007G324600 Gossypium raimondii HOM05D000011 ORTHO05D000018 8.0e-08 60.1 60 50.0
TPR.G23403 Trifolium pratense HOM05D000011 ORTHO05D000018 8.0e-08 60.1 50 58.0
Gohir.D11G299050 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.0e-07 59.7 60 50.0
Gohir.D11G299400 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.0e-07 59.7 60 50.0
Gohir.D11G299500 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.0e-07 59.7 60 50.0
MD17G1267900 Malus domestica HOM05D000002 ORTHO05D000001 1.0e-07 59.7 58 51.7
CAN.G566.19 Capsicum annuum HOM05D000011 ORTHO05D000018 1.4e-07 59.3 55 49.1
MD04G1238000 Malus domestica HOM05D000011 ORTHO05D000018 1.4e-07 59.3 57 52.6
MD12G1256300 Malus domestica HOM05D000011 ORTHO05D000018 1.4e-07 59.3 57 52.6
GSVIVG01032828001 Vitis vinifera HOM05D000011 ORTHO05D000018 1.4e-07 59.3 59 52.5
CSS0032454 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.8e-07 58.9 59 50.8
Gorai.007G324700 Gossypium raimondii HOM05D000011 ORTHO05D000018 1.8e-07 58.9 60 48.3
Lalb_Chr08g0232011 Lupinus albus HOM05D000011 ORTHO05D000018 1.8e-07 58.9 58 50.0
CSS0019484 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.3e-07 58.5 56 53.6
CSS0032345 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.3e-07 58.5 62 50.0
Glyma.18G269500 Glycine max HOM05D000011 ORTHO05D000018 2.3e-07 58.5 55 52.7
Gohir.A01G062800 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.3e-07 58.5 59 49.2
Rhsim11G0185800 Rhododendron simsii HOM05D000011 ORTHO05D000018 2.3e-07 58.5 58 50.0
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.0e-07 58.2 68 47.1
CSS0033094 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.0e-07 57.8 60 50.0
CSS0046363 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.0e-07 57.8 60 48.3
Cc06_g20740 Coffea canephora HOM05D000011 ORTHO05D000018 4.0e-07 57.8 57 56.1
COL.COLO4_17622 Corchorus olitorius HOM05D000011 ORTHO05D000018 4.0e-07 57.8 58 46.6
COL.COLO4_17626 Corchorus olitorius HOM05D000011 ORTHO05D000018 4.0e-07 57.8 58 46.6
Gohir.D11G298900 Gossypium hirsutum HOM05D000011 ORTHO05D000018 4.0e-07 57.8 60 50.0
Prupe.1G043600 Prunus persica HOM05D000011 ORTHO05D000018 4.0e-07 57.8 61 54.1
Rhsim11G0185700 Rhododendron simsii HOM05D000011 ORTHO05D000018 4.0e-07 57.8 58 50.0
TAR376G1063 Trochodendron aralioides HOM05D000011 ORTHO05D000018 4.0e-07 57.8 56 50.0
MSTRG.21985 Avicennia marina HOM05D000011 ORTHO05D000018 5.2e-07 57.4 58 53.4
CSS0002622 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 5.2e-07 57.4 56 53.6
CSS0021626 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 5.2e-07 57.4 59 49.2
COL.COLO4_36031 Corchorus olitorius HOM05D000011 ORTHO05D000018 5.2e-07 57.4 58 46.6
DCAR_008568 Daucus carota HOM05D000011 ORTHO05D000018 6.7e-07 57.0 70 41.4
Hma1.2p1_0112F.1_g054620 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 6.7e-07 57.0 59 45.8
Prupe.1G047700 Prunus persica HOM05D000011 ORTHO05D000018 6.7e-07 57.0 59 50.8
Prupe.1G048000 Prunus persica HOM05D000011 ORTHO05D000018 6.7e-07 57.0 59 50.8
RcHm_v2.0_Chr4g0407681 Rosa chinensis HOM05D000011 ORTHO05D000018 6.7e-07 57.0 56 48.2
Solyc12g096920.1 Solanum lycopersicum HOM05D000011 ORTHO05D000018 6.7e-07 57.0 53 50.9
Sopen12g032730 Solanum pennellii HOM05D000011 ORTHO05D000018 6.7e-07 57.0 53 50.9
Thecc.07G098200 Theobroma cacao HOM05D000011 ORTHO05D000018 6.7e-07 57.0 60 45.0
CSS0039306 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 8.8e-07 56.6 59 49.2
Nitab4.5_0001980g0060 Nicotiana tabacum HOM05D000011 ORTHO05D000018 8.8e-07 56.6 57 45.6
Potri.018G138500 Populus trichocarpa HOM05D000011 ORTHO05D000018 8.8e-07 56.6 55 50.9
Prupe.1G046700 Prunus persica HOM05D000011 ORTHO05D000018 8.8e-07 56.6 59 49.2
CSS0020167 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.2e-06 56.2 50 54.0
CSS0025293 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.2e-06 56.2 62 50.0
Ca_06827_v3 Cicer arietinum L. HOM05D000011 ORTHO05D000018 1.2e-06 56.2 56 53.6
Ca_06830_v3 Cicer arietinum L. HOM05D000011 ORTHO05D000018 1.2e-06 56.2 56 53.6
COL.COLO4_17238 Corchorus olitorius HOM05D000011 ORTHO05D000018 1.2e-06 56.2 57 45.6
Gohir.A11G286241 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.2e-06 56.2 60 48.3
Peaxi162Scf00169g00413 Petunia axillaris HOM05D000011 ORTHO05D000018 1.2e-06 56.2 62 50.0
Prupe.1G048500 Prunus persica HOM05D000011 ORTHO05D000018 1.2e-06 56.2 59 47.5
Sabra18G0113600 Salix brachista HOM05D000011 ORTHO05D000018 1.2e-06 56.2 55 52.7
Thecc.02G069300 Theobroma cacao HOM05D000011 ORTHO05D000018 1.2e-06 56.2 60 46.7
Thecc.07G097900 Theobroma cacao HOM05D000011 ORTHO05D000018 1.2e-06 56.2 57 47.4
TAR055G0005 Trochodendron aralioides HOM05D000011 ORTHO05D000018 1.2e-06 56.2 57 47.4
DCAR_004830 Daucus carota HOM05D000011 ORTHO05D000018 1.5e-06 55.8 56 46.4
Oeu013407.1 Olea europaea HOM05D000011 ORTHO05D000018 1.5e-06 55.8 49 59.2
Oeu035001.2 Olea europaea HOM05D000011 ORTHO05D000018 1.5e-06 55.8 58 55.2
Prupe.1G051500 Prunus persica HOM05D000011 ORTHO05D000018 1.5e-06 55.8 59 50.8
QL11p046160 Quercus lobata HOM05D000011 ORTHO05D000018 1.5e-06 55.8 60 50.0
FAN17G3093 Fragaria x ananassa HOM05D000011 ORTHO05D000018 2.0e-06 55.5 59 49.2
Gohir.D11G299600 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.0e-06 55.5 60 46.7
Nitab4.5_0001704g0020 Nicotiana tabacum HOM05D000011 ORTHO05D000018 2.0e-06 55.5 57 45.6
Hma1.2p1_1241F.1_g269740 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 2.6e-06 55.1 59 44.1
Cc06_g16170 Coffea canephora HOM05D000011 ORTHO05D000018 3.3e-06 54.7 63 50.8
COL.COLO4_25031 Corchorus olitorius HOM05D000011 ORTHO05D000018 3.3e-06 54.7 58 46.6
Gohir.A01G062850 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.3e-06 54.7 56 48.2
Gorai.007G325100 Gossypium raimondii HOM05D000011 ORTHO05D000018 3.3e-06 54.7 60 50.0
CSS0019152 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.4e-06 54.3 56 51.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.4e-06 54.3 59 50.8
Cc03_g07200 Coffea canephora HOM05D000011 ORTHO05D000018 4.4e-06 54.3 62 53.2
Dinv27103 Davidia involucrata HOM05D000011 ORTHO05D000018 4.4e-06 54.3 65 56.9
FvH4_4g22940 Fragaria vesca HOM05D000011 ORTHO05D000018 4.4e-06 54.3 59 47.5
FAN12G1277 Fragaria x ananassa HOM05D000011 ORTHO05D000018 4.4e-06 54.3 59 47.5
Gohir.A11G286741 Gossypium hirsutum HOM05D000011 ORTHO05D000018 4.4e-06 54.3 57 42.1
Gohir.D11G299000 Gossypium hirsutum HOM05D000011 ORTHO05D000018 4.4e-06 54.3 60 46.7
Gorai.007G324100 Gossypium raimondii HOM05D000011 ORTHO05D000018 4.4e-06 54.3 60 46.7
Prupe.1G043100 Prunus persica HOM05D000011 ORTHO05D000018 4.4e-06 54.3 58 50.0
Prupe.1G052200 Prunus persica HOM05D000011 ORTHO05D000018 4.4e-06 54.3 59 47.5
QL11p047044 Quercus lobata HOM05D000011 ORTHO05D000018 4.4e-06 54.3 60 50.0
Rhsim11G0185900 Rhododendron simsii HOM05D000011 ORTHO05D000018 4.4e-06 54.3 58 50.0
TAR374G1166 Trochodendron aralioides HOM05D000011 ORTHO05D000018 4.4e-06 54.3 59 47.5
Cc06_g16180 Coffea canephora HOM05D000011 ORTHO05D000018 5.7e-06 53.9 63 50.8
COL.COLO4_32990 Corchorus olitorius HOM05D000011 ORTHO05D000018 5.7e-06 53.9 60 46.7
FAN07G0136 Fragaria x ananassa HOM05D000011 ORTHO05D000018 5.7e-06 53.9 56 50.0
Lj6g0024234 Lotus japonicus HOM05D000011 ORTHO05D000018 5.7e-06 53.9 58 44.8
QL11p047227 Quercus lobata HOM05D000011 ORTHO05D000018 5.7e-06 53.9 60 50.0
Dinv27079 Davidia involucrata HOM05D000011 ORTHO05D000018 7.5e-06 53.5 50 64.0
Lj1g0009587 Lotus japonicus HOM05D000011 ORTHO05D000018 7.5e-06 53.5 52 51.9
CSS0040856 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 9.7e-06 53.1 59 49.2
CSS0043295 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 9.7e-06 53.1 51 52.9
Cc06_g16160 Coffea canephora HOM05D000011 ORTHO05D000018 9.7e-06 53.1 63 50.8
COL.COLO4_03683 Corchorus olitorius HOM05D000011 ORTHO05D000018 9.7e-06 53.1 58 44.8
COL.COLO4_12258 Corchorus olitorius HOM05D000011 ORTHO05D000018 9.7e-06 53.1 52 51.9
DCAR_004835 Daucus carota HOM05D000011 ORTHO05D000018 9.7e-06 53.1 55 49.1
Prupe.1G043700 Prunus persica HOM05D000011 ORTHO05D000018 9.7e-06 53.1 57 50.9
Prupe.1G047900 Prunus persica HOM05D000011 ORTHO05D000018 9.7e-06 53.1 59 45.8
RcHm_v2.0_Chr4g0429201 Rosa chinensis HOM05D000011 ORTHO05D000018 9.7e-06 53.1 56 44.6
Thecc.02G069100 Theobroma cacao HOM05D000011 ORTHO05D000018 9.7e-06 53.1 60 45.0


User provided reference genes

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