Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 8.1e-310 1066.2 541 100.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.9e-238 828.6 539 82.7
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 6.0e-228 794.3 589 70.8
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.2e-220 770.0 593 67.8
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.5e-218 762.3 590 66.4
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.8e-216 756.1 591 67.3
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.9e-205 719.5 588 64.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 2.7e-204 715.7 591 64.3
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 4.6e-204 714.9 590 63.9
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.0e-203 713.8 588 65.8
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 3.0e-203 712.2 588 65.8
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 3.0e-203 712.2 646 60.4
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 4.3e-202 708.4 592 61.5
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 8.1e-201 704.1 589 63.2
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 1.4e-200 703.4 589 62.8
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.8e-200 703.0 592 62.3
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 4.0e-200 701.8 604 62.3
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 6.9e-200 701.0 604 62.1
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 7.6e-199 697.6 591 62.1
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 2.9e-198 695.7 564 64.9
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.9e-197 693.0 587 61.7
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 3.5e-188 662.1 584 59.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 8.7e-187 657.5 588 57.5
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.9e-186 656.4 599 57.8
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 2.8e-185 652.5 583 58.7
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 5.3e-184 648.3 589 57.0
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 2.6e-183 646.0 589 57.7
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.3e-182 643.7 584 57.4
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.4e-181 640.2 584 57.2
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.9e-181 639.8 591 57.5
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.6e-180 636.7 591 56.7
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 2.7e-180 636.0 584 58.6
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 4.6e-180 635.2 596 57.7
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.1e-180 634.8 588 56.1
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.3e-179 633.6 591 56.9
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 3.0e-179 632.5 588 56.6
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 8.7e-179 630.9 594 55.7
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 1.1e-178 630.6 588 57.0
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 2.5e-178 629.4 588 57.8
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 4.3e-178 628.6 583 58.3
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 7.4e-178 627.9 589 56.4
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.3e-177 627.1 593 55.5
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.3e-176 621.7 597 56.6
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 2.2e-174 616.3 590 55.6
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.4e-173 613.6 590 55.4
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.1e-172 609.8 593 55.6
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 7.9e-172 607.8 590 54.4
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.3e-171 606.3 588 56.3
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 3.0e-171 605.9 597 55.1
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.1e-171 605.1 594 56.2
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 7.4e-170 601.3 588 57.0
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 7.4e-170 601.3 591 55.2
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 6.3e-169 598.2 591 54.7
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 6.3e-169 598.2 595 54.8
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.4e-168 597.0 592 53.4
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.8e-168 596.7 592 54.7
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 6.9e-168 594.7 592 53.9
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 5.9e-167 591.7 579 56.1
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 5.9e-167 591.7 590 53.1
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.7e-166 590.1 584 56.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 2.2e-166 589.7 591 54.1
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 2.9e-166 589.3 606 53.5
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.9e-166 589.3 591 53.3
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.1e-165 587.4 591 54.0
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 7.2e-165 584.7 405 70.9
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 2.3e-163 579.7 572 54.5
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 3.0e-163 579.3 592 53.4
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 3.0e-163 579.3 567 55.6
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.0e-163 579.3 632 51.9
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 1.1e-162 577.4 400 69.8
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 3.3e-162 575.9 587 54.3
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 5.0e-158 562.0 606 51.2
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 2.1e-156 556.6 475 62.7
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 3.1e-152 542.7 586 48.5
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.9e-150 536.2 400 66.0
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 1.6e-143 513.8 595 48.4
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 5.2e-139 498.8 419 60.1
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 5.7e-138 495.4 646 46.7
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 9.8e-138 494.6 593 47.2
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 3.1e-136 489.6 400 61.2
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.0e-134 484.6 556 47.1
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 7.3e-133 478.4 491 54.2
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 2.8e-132 476.5 348 68.4
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 6.1e-132 475.3 335 71.6
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.4e-131 474.2 527 51.6
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 6.8e-131 471.9 332 71.4
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 6.6e-126 455.3 435 60.2
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 3.6e-124 449.5 537 47.7
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 8.0e-124 448.4 335 68.1
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 6.8e-123 445.3 549 47.0
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 5.4e-112 409.1 424 52.1
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 8.9e-107 391.7 547 43.3
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 2.3e-102 377.1 495 43.8
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.5e-101 373.6 389 54.2
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.6e-87 327.8 576 37.0
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 1.2e-79 301.6 672 32.7
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 4.5e-74 283.1 656 30.2
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.0e-70 271.9 486 35.8
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.3e-70 270.8 564 34.9
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 4.8e-68 263.1 597 32.0
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 3.1e-67 260.4 599 31.7
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.0e-62 243.8 138 82.6
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.7e-60 236.9 382 39.5
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.8e-44 184.1 154 53.9
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 4.8e-44 183.3 131 65.6
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.4e-43 181.0 320 38.8
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 3.7e-36 157.1 89 79.8
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 7.0e-35 152.9 89 77.5
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.2e-34 152.1 218 44.5
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 6.5e-33 146.4 313 32.9
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 4.5e-26 123.6 71 81.7
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 4.5e-26 123.6 162 48.8
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.1e-24 119.0 204 41.2
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 2.8e-23 114.4 123 50.4
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 4.7e-23 113.6 247 30.4
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 5.2e-22 110.2 146 45.2
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.3e-20 103.2 59 76.3
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 1.2e-13 82.4 90 47.8
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.2e-12 78.2 82 57.3
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 3.5e-10 70.9 75 50.7
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-09 68.9 62 51.6
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.1e-08 65.9 45 77.8
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 1.5e-08 65.5 77 42.9
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 5.2e-06 57.0 32 81.2


User provided reference genes

Program Settings