Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00710 Davidia involucrata HOM05D000265 ORTHO05D022501 4.2e-34 147.5 78 100.0
Hma1.2p1_0101F.1_g049110 Hydrangea macrophylla HOM05D000265 ORTHO05D000161 1.2e-20 102.8 78 67.9
Hma1.2p1_2584F.1_g324870 Hydrangea macrophylla HOM05D000265 ORTHO05D000161 1.2e-20 102.8 78 67.9
TAR375G0857 Trochodendron aralioides HOM05D000265 ORTHO05D000161 6.6e-19 97.1 79 65.8
Actinidia07979 Actinidia chinensis HOM05D000265 ORTHO05D000161 5.5e-18 94.0 77 64.9
Actinidia20257 Actinidia chinensis HOM05D000265 ORTHO05D000161 1.6e-17 92.4 67 70.1
QL08p046019 Quercus lobata HOM05D000265 ORTHO05D000161 8.0e-17 90.1 78 60.3
MBI04_g36398_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 1.4e-16 89.4 74 63.5
QL08p045995 Quercus lobata HOM05D000265 ORTHO05D000161 1.8e-16 89.0 78 59.0
Rhsim01G0175400 Rhododendron simsii HOM05D000265 ORTHO05D000161 2.3e-16 88.6 77 58.4
GSVIVG01027186001 Vitis vinifera HOM05D000265 ORTHO05D000161 5.2e-16 87.4 70 70.0
MBI12_g20257_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 2.0e-15 85.5 74 62.2
TAR629G0965 Trochodendron aralioides HOM05D000265 ORTHO05D000813 3.4e-15 84.7 77 63.6
CSS0039914 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 5.7e-15 84.0 69 60.9
MBI04_g06932_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 7.5e-15 83.6 79 59.5
MBI04_g06936_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 2.2e-14 82.0 79 57.0
Rhsim07G0002500 Rhododendron simsii HOM05D000265 ORTHO05D000161 2.2e-14 82.0 64 67.2
Actinidia28107 Actinidia chinensis HOM05D000265 ORTHO05D000161 3.7e-14 81.3 68 63.2
Lj7C496T6 Lonicera japonica HOM05D000265 ORTHO05D000161 8.3e-14 80.1 78 59.0
Thecc.01G338900 Theobroma cacao HOM05D000265 ORTHO05D000161 1.1e-13 79.7 78 51.3
Dinv06546 Davidia involucrata HOM05D000265 ORTHO05D000161 1.4e-13 79.3 75 54.7
Sabra01G0062200 Salix brachista HOM05D000265 ORTHO05D000161 1.8e-13 79.0 69 58.0
ECA236G3965 Erigeron canadensis HOM05D000265 ORTHO05D000161 2.4e-13 78.6 69 60.9
Atru.chr5.711 Acer truncatum HOM05D000265 ORTHO05D000161 3.2e-13 78.2 66 62.1
Dinv11458 Davidia involucrata HOM05D000265 ORTHO05D000161 4.1e-13 77.8 69 55.1
QL02p028970 Quercus lobata HOM05D000265 ORTHO05D000161 7.0e-13 77.0 74 52.7
vmacro11518 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 7.0e-13 77.0 77 49.4
Lsat_1_v5_gn_7_3140 Lactuca sativa HOM05D000265 ORTHO05D000161 1.6e-12 75.9 65 60.0
Prupe.5G127200 Prunus persica HOM05D000265 ORTHO05D000161 1.6e-12 75.9 74 56.8
Sabra03G0105500 Salix brachista HOM05D000265 ORTHO05D000161 2.0e-12 75.5 65 58.5
Aqoxy7G00040 Aquilegia oxysepala HOM05D000265 ORTHO05D000161 2.7e-12 75.1 74 54.1
CiPaw.01G078500 Carya illinoinensis HOM05D000265 ORTHO05D000161 4.6e-12 74.3 68 57.4
Rhsim02G0250600 Rhododendron simsii HOM05D000265 ORTHO05D000161 4.6e-12 74.3 73 52.1
Potri.002G174600 Populus trichocarpa HOM05D000265 ORTHO05D000161 5.9e-12 73.9 69 55.1
RcHm_v2.0_Chr7g0186561 Rosa chinensis HOM05D000265 ORTHO05D000161 5.9e-12 73.9 67 56.7
CANSAT21G0281 Cannabis sativa HOM05D000265 ORTHO05D000161 7.8e-12 73.6 76 52.6
FAN08G2854 Fragaria x ananassa HOM05D000265 ORTHO05D000161 7.8e-12 73.6 67 56.7
Nn3g18915 Nelumbo nucifera HOM05D000265 ORTHO05D000161 7.8e-12 73.6 75 52.0
PSO368G0002 Papaver somniferum HOM05D000265 ORTHO05D022501 7.8e-12 73.6 74 56.8
Potri.003G145000 Populus trichocarpa HOM05D000265 ORTHO05D000161 7.8e-12 73.6 68 57.4
Cpa.g.sc96.62 Carica papaya HOM05D000265 ORTHO05D000161 1.0e-11 73.2 65 58.5
Ciclev10024564m.g Citrus clementina HOM05D000265 ORTHO05D000161 1.0e-11 73.2 81 53.1
FvH4_5g11291 Fragaria vesca HOM05D000265 ORTHO05D000161 1.0e-11 73.2 67 56.7
FAN07G0636 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.0e-11 73.2 67 55.2
FAN17G1963 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.0e-11 73.2 67 55.2
FAN18G0891 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.0e-11 73.2 67 56.7
FAN18G1545 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.0e-11 73.2 67 56.7
Lj8C202G4 Lonicera japonica HOM05D000265 ORTHO05D000161 1.0e-11 73.2 65 55.4
MBI04_g36396_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 1.0e-11 73.2 80 53.8
Sc01g0002440 Simmondsia chinensis HOM05D000265 ORTHO05D000161 1.0e-11 73.2 78 51.3
PGSC0003DMG400000121 Solanum tuberosum HOM05D000265 ORTHO05D000161 1.0e-11 73.2 74 58.1
Nitab4.5_0000307g0020 Nicotiana tabacum HOM05D000265 ORTHO05D000161 1.3e-11 72.8 74 58.1
CiPaw.12G078900 Carya illinoinensis HOM05D000265 ORTHO05D000161 1.7e-11 72.4 68 54.4
PSO782G2837 Papaver somniferum HOM05D000265 ORTHO05D000161 1.7e-11 72.4 74 55.4
FAN22G1247 Fragaria x ananassa HOM05D000265 ORTHO05D000161 2.3e-11 72.0 67 53.7
Nitab4.5_0006770g0060 Nicotiana tabacum HOM05D000265 ORTHO05D000161 2.3e-11 72.0 74 58.1
CiPaw.11G114500 Carya illinoinensis HOM05D000265 ORTHO05D000161 2.9e-11 71.6 69 52.2
MBI04_g06934_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D000161 2.9e-11 71.6 74 55.4
Atru.chr9.1911 Acer truncatum HOM05D000265 ORTHO05D000161 3.9e-11 71.2 76 53.9
DCAR_008671 Daucus carota HOM05D000265 ORTHO05D000161 3.9e-11 71.2 78 48.7
FvH4_4g16071 Fragaria vesca HOM05D000265 ORTHO05D000161 3.9e-11 71.2 67 53.7
FAN04G1155 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.9e-11 71.2 67 55.2
FAN12G0169 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.9e-11 71.2 67 53.7
Peaxi162Scf00345g00029 Petunia axillaris HOM05D000265 ORTHO05D000161 3.9e-11 71.2 73 56.2
Solyc01g096140.3 Solanum lycopersicum HOM05D000265 ORTHO05D000161 3.9e-11 71.2 74 56.8
Sopen01g039870 Solanum pennellii HOM05D000265 ORTHO05D000161 3.9e-11 71.2 74 56.8
Hma1.2p1_0440F.1_g153700 Hydrangea macrophylla HOM05D000265 ORTHO05D000161 5.0e-11 70.9 65 55.4
MD14G1135700 Malus domestica HOM05D000265 ORTHO05D000161 5.0e-11 70.9 66 57.6
MD06G1114500 Malus domestica HOM05D000265 ORTHO05D000161 6.6e-11 70.5 71 56.3
Potri.001G085900 Populus trichocarpa HOM05D000265 ORTHO05D000161 1.1e-10 69.7 69 53.6
COL.COLO4_06240 Corchorus olitorius HOM05D000265 ORTHO05D000161 1.5e-10 69.3 68 51.5
FAN06G3438 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.5e-10 69.3 65 56.9
Gohir.A07G136100 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.9e-10 68.9 62 59.7
ClCG06G002690 Citrullus lanatus HOM05D000265 ORTHO05D000161 3.3e-10 68.2 78 47.4
COL.COLO4_10771 Corchorus olitorius HOM05D000265 ORTHO05D000161 3.3e-10 68.2 71 50.7
FAN06G2189 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.3e-10 68.2 70 55.7
Cfa011947 Carpinus fangiana HOM05D000265 ORTHO05D000161 4.3e-10 67.8 69 50.7
Manes.02G004700 Manihot esculenta HOM05D000265 ORTHO05D000161 4.3e-10 67.8 69 52.2
Thecc.03G223800 Theobroma cacao HOM05D000265 ORTHO05D000161 4.3e-10 67.8 68 55.9
CAN.G1415.14 Capsicum annuum HOM05D000265 ORTHO05D000161 7.3e-10 67.0 72 55.6
Gohir.D07G141200 Gossypium hirsutum HOM05D000265 ORTHO05D000161 7.3e-10 67.0 62 59.7
PGR042G1631 Punica granatum HOM05D000265 ORTHO05D000161 7.3e-10 67.0 61 57.4
Duzib084G1203 Durio zibethinus HOM05D000265 ORTHO05D000161 9.5e-10 66.6 68 54.4
FAN01G0319 Fragaria x ananassa HOM05D000265 ORTHO05D000161 9.5e-10 66.6 65 55.4
FAN10G1523 Fragaria x ananassa HOM05D000265 ORTHO05D000161 9.5e-10 66.6 65 55.4
FAN10G2887 Fragaria x ananassa HOM05D000265 ORTHO05D000161 9.5e-10 66.6 65 55.4
Gorai.001G153100 Gossypium raimondii HOM05D000265 ORTHO05D000161 9.5e-10 66.6 62 59.7
MBI04_g36397_MAGBIO Magnolia biondii HOM05D000265 ORTHO05D022501 1.2e-09 66.2 55 65.5
Haze_09133 Corylus avellana HOM05D000265 ORTHO05D000161 1.6e-09 65.9 69 49.3
MELO3C022258.2 Cucumis melo HOM05D000265 ORTHO05D000161 1.6e-09 65.9 62 56.5
TWI60G0504 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 1.6e-09 65.9 61 52.5
Cfa011944 Carpinus fangiana HOM05D000265 ORTHO05D000161 2.1e-09 65.5 71 47.9
Duzib068G1065 Durio zibethinus HOM05D000265 ORTHO05D000161 2.1e-09 65.5 68 54.4
MD14G1135900 Malus domestica HOM05D000265 ORTHO05D000161 2.1e-09 65.5 66 54.5
Eucgr.E00035 Eucalyptus grandis HOM05D000265 ORTHO05D000161 2.8e-09 65.1 76 50.0
FAN03G0626 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.6e-09 64.7 65 53.8
PSO384G1412 Papaver somniferum HOM05D000265 ORTHO05D000161 3.6e-09 64.7 76 50.0
Oeu043219.1 Olea europaea HOM05D000265 ORTHO05D000161 4.7e-09 64.3 66 57.6
RcHm_v2.0_Chr1g0360401 Rosa chinensis HOM05D000265 ORTHO05D000161 4.7e-09 64.3 65 52.3
CsaV3_6G008820 Cucumis sativus L. HOM05D000265 ORTHO05D000161 6.2e-09 63.9 62 54.8
Migut.B01896 Erythranthe guttata HOM05D000265 ORTHO05D000161 6.2e-09 63.9 73 50.7
Oeu007874.1 Olea europaea HOM05D000265 ORTHO05D000161 6.2e-09 63.9 66 56.1
Cc00_g23280 Coffea canephora HOM05D000265 ORTHO05D000161 8.0e-09 63.5 76 38.2
TPR.G7827 Trifolium pratense HOM05D000265 ORTHO05D000161 8.0e-09 63.5 64 54.7
Haze_09142 Corylus avellana HOM05D000265 ORTHO05D000161 1.0e-08 63.2 67 47.8
SalBow3G1339 Salvia bowleyana HOM05D000265 ORTHO05D000161 1.0e-08 63.2 67 49.3
SalBow3G3042 Salvia bowleyana HOM05D000265 ORTHO05D000161 1.0e-08 63.2 67 49.3
Ciclev10024452m.g Citrus clementina HOM05D000265 ORTHO05D000161 1.4e-08 62.8 61 55.7
Lalb_Chr06g0168631 Lupinus albus HOM05D000265 ORTHO05D000161 1.4e-08 62.8 68 44.1
vmacro04287 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 1.4e-08 62.8 52 63.5
EL10Ac1g00232 Beta vulgaris HOM05D000265 ORTHO05D000161 1.8e-08 62.4 68 48.5
CAN.G567.72 Capsicum annuum HOM05D000265 ORTHO05D000161 1.8e-08 62.4 68 45.6
MD07G1153600 Malus domestica HOM05D000265 ORTHO05D000161 1.8e-08 62.4 74 50.0
PSO135G0402 Papaver somniferum HOM05D000265 ORTHO05D000161 1.8e-08 62.4 69 50.7
Potri.014G101200 Populus trichocarpa HOM05D000265 ORTHO05D000161 1.8e-08 62.4 55 58.2
RcHm_v2.0_Chr3g0450291 Rosa chinensis HOM05D000265 ORTHO05D022501 1.8e-08 62.4 60 55.0
Aa31LG5G1010 Aethionema arabicum HOM05D000265 ORTHO05D000161 2.3e-08 62.0 68 48.5
Migut.N01530 Erythranthe guttata HOM05D000265 ORTHO05D000161 2.3e-08 62.0 67 55.2
Thhalv10028612m.g Eutrema salsugineum HOM05D000265 ORTHO05D000161 3.1e-08 61.6 68 47.1
Lsat_1_v5_gn_3_13580 Lactuca sativa HOM05D000265 ORTHO05D000161 3.1e-08 61.6 75 45.3
Sp6g01200 Schrenkiella parvula HOM05D000265 ORTHO05D000161 3.1e-08 61.6 68 47.1
Peaxi162Scf00074g00344 Petunia axillaris HOM05D000265 ORTHO05D000161 4.0e-08 61.2 68 45.6
Prupe.2G192500 Prunus persica HOM05D000265 ORTHO05D000161 4.0e-08 61.2 64 54.7
AT4G00910 Arabidopsis thaliana HOM05D000265 ORTHO05D000161 5.2e-08 60.8 77 44.2
AUR62022733 Chenopodium quinoa HOM05D000265 ORTHO05D000161 5.2e-08 60.8 78 46.2
Gohir.A02G097302 Gossypium hirsutum HOM05D000265 ORTHO05D000161 5.2e-08 60.8 72 50.0
GSVIVG01019627001 Vitis vinifera HOM05D000265 ORTHO05D000161 5.2e-08 60.8 75 46.7
HanXRQChr17g0534451 Helianthus annuus HOM05D000265 ORTHO05D000161 6.8e-08 60.5 65 49.2
Nitab4.5_0005042g0010 Nicotiana tabacum HOM05D000265 ORTHO05D000161 6.8e-08 60.5 68 45.6
Hund27177 Selenicereus undatus HOM05D000265 ORTHO05D000161 6.8e-08 60.5 75 46.7
Gohir.1Z049497 Gossypium hirsutum HOM05D000265 ORTHO05D000161 8.9e-08 60.1 54 61.1
CARHR249410 Cardamine hirsuta HOM05D000265 ORTHO05D000161 1.2e-07 59.7 68 47.1
ECA246G2004 Erigeron canadensis HOM05D000295 ORTHO05D000161 1.2e-07 59.7 67 47.8
AL6G52470 Arabidopsis lyrata HOM05D000265 ORTHO05D000161 1.5e-07 59.3 68 47.1
Nitab4.5_0002728g0070 Nicotiana tabacum HOM05D000265 ORTHO05D000161 1.5e-07 59.3 68 44.1
TWI81G0228 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 1.5e-07 59.3 60 48.3
AUR62004522 Chenopodium quinoa HOM05D000265 ORTHO05D000161 2.0e-07 58.9 78 44.9
BcaB01g02297 Brassica carinata HOM05D000265 ORTHO05D000161 2.6e-07 58.5 68 45.6
Carub.0006s3597 Capsella rubella HOM05D000265 ORTHO05D000161 2.6e-07 58.5 77 44.2
Gorai.004G130400 Gossypium raimondii HOM05D000265 ORTHO05D000161 2.6e-07 58.5 72 47.2
C09p01000 Brassica napus HOM05D000265 ORTHO05D000161 3.4e-07 58.2 67 43.3
BolC9t53033H Brassica oleracea HOM05D000265 ORTHO05D000161 3.4e-07 58.2 67 43.3
Gohir.D03G086300 Gossypium hirsutum HOM05D000265 ORTHO05D000161 3.4e-07 58.2 72 48.6
Gorai.003G075900 Gossypium raimondii HOM05D000265 ORTHO05D000161 3.4e-07 58.2 72 48.6
Manes.01G243800 Manihot esculenta HOM05D000265 ORTHO05D000161 3.4e-07 58.2 63 54.0
A09p00910 Brassica napus HOM05D000265 ORTHO05D000161 4.4e-07 57.8 67 43.3
BraA09t35762Z Brassica rapa HOM05D000265 ORTHO05D000161 4.4e-07 57.8 67 43.3
Gohir.A08G081200 Gossypium hirsutum HOM05D000265 ORTHO05D000161 4.4e-07 57.8 72 45.8
Gohir.D08G123700 Gossypium hirsutum HOM05D000265 ORTHO05D000161 4.4e-07 57.8 72 45.8
BcaC03g16080 Brassica carinata HOM05D000265 ORTHO05D000161 5.8e-07 57.4 68 45.6
C02p38410 Brassica napus HOM05D000265 ORTHO05D000161 5.8e-07 57.4 68 45.6
BolC2t09858H Brassica oleracea HOM05D000265 ORTHO05D000161 5.8e-07 57.4 68 45.6
Glyma.10G173400 Glycine max HOM05D000265 ORTHO05D000161 5.8e-07 57.4 69 40.6
Glyma.20G216800 Glycine max HOM05D000265 ORTHO05D000161 1.3e-06 56.2 68 39.7
VMungo0720G0835 Vigna mungo HOM05D000265 ORTHO05D000161 1.3e-06 56.2 63 42.9
BcaB05g23968 Brassica carinata HOM05D000265 ORTHO05D000161 1.7e-06 55.8 61 47.5
BcaC04g24111 Brassica carinata HOM05D000265 ORTHO05D000161 1.7e-06 55.8 67 41.8
A02p24360 Brassica napus HOM05D000265 ORTHO05D000161 2.2e-06 55.5 68 44.1
BraA02t07426Z Brassica rapa HOM05D000265 ORTHO05D000161 2.2e-06 55.5 68 44.1
arahy.Tifrunner.gnm1.ann1.9CI41Y Arachis hypogaea HOM05D000265 ORTHO05D000161 2.9e-06 55.1 60 43.3
HanXRQChr06g0166681 Helianthus annuus HOM05D000265 ORTHO05D000161 2.9e-06 55.1 67 47.8
Solyc08g082950.4 Solanum lycopersicum HOM05D000265 ORTHO05D000161 2.9e-06 55.1 69 42.0
Sopen08g031170 Solanum pennellii HOM05D000265 ORTHO05D000161 2.9e-06 55.1 69 42.0
TPR.G8873 Trifolium pratense HOM05D000265 ORTHO05D000161 2.9e-06 55.1 59 49.2
arahy.Tifrunner.gnm1.ann1.U64HGN Arachis hypogaea HOM05D000265 ORTHO05D000161 3.7e-06 54.7 60 43.3
Psat6g053720 Pisum sativum HOM05D000265 ORTHO05D000161 3.7e-06 54.7 59 47.5
C03p38740 Brassica napus HOM05D000265 ORTHO05D000161 4.9e-06 54.3 67 43.3
BolC3t16148H Brassica oleracea HOM05D000265 ORTHO05D000161 4.9e-06 54.3 67 43.3
DCAR_006529 Daucus carota HOM05D000265 ORTHO05D000161 4.9e-06 54.3 66 42.4
SalBow5G2415 Salvia bowleyana HOM05D000265 ORTHO05D000161 4.9e-06 54.3 64 46.9
SEGI_28101 Sequoiadendron giganteum HOM05D000265 ORTHO05D000001 4.9e-06 54.3 87 39.1
Ah.05g179310 Amaranthus hybridus HOM05D000265 ORTHO05D000161 8.3e-06 53.5 65 41.5
Medtr1g077670 Medicago truncatula HOM05D000265 ORTHO05D000161 8.3e-06 53.5 56 50.0


User provided reference genes

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