Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00616 Davidia involucrata HOM05D003775 ORTHO05D004314 2.5e-59 231.9 115 100.0
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 6.5e-23 110.9 59 91.5
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 8.4e-23 110.5 59 89.8
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 8.4e-23 110.5 59 89.8
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 4.2e-22 108.2 59 86.4
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 9.3e-22 107.1 59 86.4
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 1.2e-21 106.7 59 89.8
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 2.1e-21 105.9 59 89.8
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 2.7e-21 105.5 59 88.1
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 7.9e-21 104.0 59 86.4
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 7.9e-21 104.0 59 88.1
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 1.8e-20 102.8 86 66.3
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 2.3e-20 102.4 59 83.1
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 2.3e-20 102.4 59 86.4
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 2.3e-20 102.4 59 86.4
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 2.3e-20 102.4 59 84.7
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 3.0e-20 102.1 59 83.1
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 3.9e-20 101.7 59 84.7
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 5.1e-20 101.3 60 85.0
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 6.7e-20 100.9 59 84.7
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 6.7e-20 100.9 59 83.1
Sc10g0004200 Simmondsia chinensis HOM05D003775 ORTHO05D004314 6.7e-20 100.9 63 79.4
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 8.7e-20 100.5 58 82.8
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 8.7e-20 100.5 59 83.1
Lsat_1_v5_gn_1_98220 Lactuca sativa HOM05D003775 ORTHO05D004314 1.1e-19 100.1 59 81.4
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 1.9e-19 99.4 58 84.5
arahy.Tifrunner.gnm1.ann1.IE4AJN Arachis hypogaea HOM05D003775 ORTHO05D004314 1.9e-19 99.4 58 84.5
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 1.9e-19 99.4 59 83.1
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 1.9e-19 99.4 59 79.7
ATR0721G058 Amborella trichopoda HOM05D003775 ORTHO05D004314 2.5e-19 99.0 59 83.1
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 2.5e-19 99.0 80 66.2
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 3.3e-19 98.6 59 79.7
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 3.3e-19 98.6 59 83.1
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 3.3e-19 98.6 59 83.1
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 4.3e-19 98.2 59 83.1
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 4.3e-19 98.2 58 84.5
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 4.3e-19 98.2 58 84.5
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 5.7e-19 97.8 59 79.7
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 5.7e-19 97.8 65 76.9
HanXRQChr01g0020841 Helianthus annuus HOM05D003775 ORTHO05D004314 7.4e-19 97.4 59 78.0
HPP92_025001 Vanilla planifolia HOM05D003775 ORTHO05D004314 7.4e-19 97.4 67 71.6
DCAR_002120 Daucus carota HOM05D003775 ORTHO05D004314 9.7e-19 97.1 82 62.2
Lj1A317T43 Lonicera japonica HOM05D003775 ORTHO05D004314 1.3e-18 96.7 59 81.4
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 1.3e-18 96.7 58 82.8
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 1.6e-18 96.3 59 83.1
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 1.6e-18 96.3 81 65.4
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 1.6e-18 96.3 59 81.4
Haze_03108 Corylus avellana HOM05D003775 ORTHO05D004314 2.2e-18 95.9 58 82.8
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 2.8e-18 95.5 59 79.7
THA.LOC104819115 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 2.8e-18 95.5 61 78.7
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 3.7e-18 95.1 59 78.0
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 3.7e-18 95.1 58 77.6
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 3.7e-18 95.1 59 79.7
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 4.8e-18 94.7 55 81.8
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 8.2e-18 94.0 55 80.0
Aa31LG2G19490 Aethionema arabicum HOM05D003775 ORTHO05D004314 1.1e-17 93.6 61 77.0
Ah.05g171640 Amaranthus hybridus HOM05D003775 ORTHO05D004314 1.1e-17 93.6 64 73.4
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 1.1e-17 93.6 59 78.0
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 1.1e-17 93.6 58 82.8
Thhalv10025311m.g Eutrema salsugineum HOM05D003775 ORTHO05D004314 1.4e-17 93.2 61 77.0
CDE02G2263 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 1.8e-17 92.8 59 78.0
CDE09G1021 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 1.8e-17 92.8 59 79.7
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 1.8e-17 92.8 59 78.0
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.8e-17 92.8 64 73.4
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 1.8e-17 92.8 58 81.0
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 2.4e-17 92.4 59 76.3
Actinidia06930 Actinidia chinensis HOM05D003775 ORTHO05D004314 3.1e-17 92.0 59 78.0
TPR.G20248 Trifolium pratense HOM05D003775 ORTHO05D004314 3.1e-17 92.0 55 80.0
CANSAT80G1378 Cannabis sativa HOM05D003775 ORTHO05D004314 4.1e-17 91.7 60 80.0
FAN10G1046 Fragaria x ananassa HOM05D003775 ORTHO05D004314 4.1e-17 91.7 59 74.6
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 5.3e-17 91.3 59 78.0
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 5.3e-17 91.3 59 76.3
Sp7g28760 Schrenkiella parvula HOM05D003775 ORTHO05D004314 5.3e-17 91.3 57 78.9
BcaB03g12665 Brassica carinata HOM05D003775 ORTHO05D004314 6.9e-17 90.9 57 78.9
Dinv22154 Davidia involucrata HOM05D003775 ORTHO05D004314 6.9e-17 90.9 59 78.0
Nitab4.5_0002726g0070 Nicotiana tabacum HOM05D003775 ORTHO05D004314 6.9e-17 90.9 60 75.0
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 6.9e-17 90.9 60 80.0
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.2e-16 90.1 60 73.3
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.2e-16 90.1 59 74.6
Oeu061300.1 Olea europaea HOM05D003775 ORTHO05D004314 1.2e-16 90.1 59 76.3
Oeu061301.1 Olea europaea HOM05D003775 ORTHO05D004314 1.2e-16 90.1 59 76.3
THA.LOC104826715 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 1.2e-16 90.1 59 76.3
BcaNung02733 Brassica carinata HOM05D003775 ORTHO05D004314 1.5e-16 89.7 57 77.2
BcaNung03431 Brassica carinata HOM05D003775 ORTHO05D004314 1.5e-16 89.7 57 77.2
A01p07290 Brassica napus HOM05D003775 ORTHO05D004314 1.5e-16 89.7 57 77.2
C07p58270 Brassica napus HOM05D003775 ORTHO05D004314 1.5e-16 89.7 57 77.2
BolC7t46285H Brassica oleracea HOM05D003775 ORTHO05D004314 1.5e-16 89.7 57 77.2
BraA01t00678Z Brassica rapa HOM05D003775 ORTHO05D004314 1.5e-16 89.7 57 77.2
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 1.5e-16 89.7 59 72.9
Sed0004278 Sechium edule HOM05D003775 ORTHO05D004314 1.5e-16 89.7 59 74.6
PGSC0003DMG400012740 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.5e-16 89.7 61 65.6
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 2.0e-16 89.4 59 76.3
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 2.6e-16 89.0 59 78.0
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 2.6e-16 89.0 61 72.1
PSO384G3184 Papaver somniferum HOM05D003775 ORTHO05D004314 2.6e-16 89.0 59 74.6
SalBow6G0244 Salvia bowleyana HOM05D003775 ORTHO05D004314 2.6e-16 89.0 59 74.6
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 2.6e-16 89.0 58 72.4
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 2.6e-16 89.0 58 72.4
SGA_v2.0_scaffold354G49741 Striga asiatica HOM05D003775 ORTHO05D004314 2.6e-16 89.0 58 74.1
Carub.0007s0965 Capsella rubella HOM05D003775 ORTHO05D004314 3.4e-16 88.6 61 73.8
Nitab4.5_0006878g0040 Nicotiana tabacum HOM05D003775 ORTHO05D004314 3.4e-16 88.6 57 75.4
Os07g0661300 Oryza sativa ssp. japonica HOM05D003775 ORTHO05D004314 3.4e-16 88.6 59 72.9
SalBow6G4543 Salvia bowleyana HOM05D003775 ORTHO05D004314 3.4e-16 88.6 58 72.4
Actinidia16351 Actinidia chinensis HOM05D003775 ORTHO05D004314 4.5e-16 88.2 59 78.0
BcaC09g51876 Brassica carinata HOM05D003775 ORTHO05D004314 4.5e-16 88.2 57 75.4
C01p08050 Brassica napus HOM05D003775 ORTHO05D004314 4.5e-16 88.2 57 75.4
BolC1t00794H Brassica oleracea HOM05D003775 ORTHO05D004314 4.5e-16 88.2 57 75.4
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 5.9e-16 87.8 58 75.9
A03p60400 Brassica napus HOM05D003775 ORTHO05D004314 7.7e-16 87.4 57 75.4
Migut.N01820 Erythranthe guttata HOM05D003775 ORTHO05D004314 1.0e-15 87.0 58 72.4
Migut.O00905 Erythranthe guttata HOM05D003775 ORTHO05D004314 1.0e-15 87.0 58 72.4
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 1.0e-15 87.0 58 69.0
unitig_0.g1004 Utricularia gibba HOM05D001495 ORTHO05D004314 1.0e-15 87.0 59 71.2
BcaC01g01133 Brassica carinata HOM05D003775 ORTHO05D004314 1.3e-15 86.7 57 75.4
A08p19030 Brassica napus HOM05D003775 ORTHO05D004314 1.3e-15 86.7 57 75.4
C03p88460 Brassica napus HOM05D003775 ORTHO05D004314 1.3e-15 86.7 57 75.4
BolC3t21154H Brassica oleracea HOM05D003775 ORTHO05D004314 1.3e-15 86.7 57 75.4
PSO339G4517 Papaver somniferum HOM05D003775 ORTHO05D004314 1.3e-15 86.7 59 72.9
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 2.2e-15 85.9 59 74.6
CARHR238790 Cardamine hirsuta HOM05D003775 ORTHO05D004314 2.9e-15 85.5 61 68.9
HanXRQChr13g0401471 Helianthus annuus HOM05D003775 ORTHO05D004314 2.9e-15 85.5 59 74.6
Migut.N02350 Erythranthe guttata HOM05D003775 ORTHO05D004314 5.0e-15 84.7 57 73.7
SGA_v2.0_scaffold42G16081 Striga asiatica HOM05D003775 ORTHO05D004314 5.0e-15 84.7 57 73.7
SGA_v2.0_scaffold42G16084 Striga asiatica HOM05D003775 ORTHO05D004314 5.0e-15 84.7 57 73.7
BraA08t33864Z Brassica rapa HOM05D003775 ORTHO05D004314 6.5e-15 84.3 57 73.7
Hma1.2p1_1200F.1_g266540 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 6.5e-15 84.3 59 74.6
Hma1.2p1_1694F.1_g298010 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 6.5e-15 84.3 59 74.6
Sopen11g024920 Solanum pennellii HOM05D003775 ORTHO05D004314 6.5e-15 84.3 57 73.7
CAN.G633.2 Capsicum annuum HOM05D003775 ORTHO05D004314 8.5e-15 84.0 57 73.7
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 8.5e-15 84.0 59 66.1
Solyc11g065210.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 8.5e-15 84.0 57 71.9
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.1e-14 83.6 58 67.2
Mapoly0004s0306 Marchantia polymorpha HOM05D003775 ORTHO05D004314 2.5e-14 82.4 82 53.7
ECA233G1032 Erigeron canadensis HOM05D003775 ORTHO05D004314 3.2e-14 82.0 59 69.5
PGSC0003DMG400012741 Solanum tuberosum HOM05D003775 ORTHO05D004314 4.2e-14 81.6 72 55.6
PGSC0003DMG400013186 Solanum tuberosum HOM05D003775 ORTHO05D004314 5.5e-14 81.3 57 71.9
Zm00001eb329890 Zea mays HOM05D003775 ORTHO05D004314 7.2e-14 80.9 59 66.1
AL7G21200 Arabidopsis lyrata HOM05D003775 ORTHO05D004314 9.4e-14 80.5 60 70.0
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 9.4e-14 80.5 55 72.7
Zm00001eb110870 Zea mays HOM05D003775 ORTHO05D004314 9.4e-14 80.5 59 66.1
SEGI_11797 Sequoiadendron giganteum HOM05D003775 ORTHO05D004314 1.2e-13 80.1 58 63.8
unitig_22.g6197 Utricularia gibba HOM05D003775 ORTHO05D004314 1.6e-13 79.7 59 67.8
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 2.7e-13 79.0 67 61.2
MSTRG.12454 Avicennia marina HOM05D003775 ORTHO05D004314 6.1e-13 77.8 59 67.8
AT4G30890 Arabidopsis thaliana HOM05D003775 ORTHO05D004314 7.9e-13 77.4 60 68.3
Cc01_g06210 Coffea canephora HOM05D003775 ORTHO05D004314 7.9e-13 77.4 57 70.2
Lsat_1_v5_gn_6_26100 Lactuca sativa HOM05D003775 ORTHO05D004314 1.4e-12 76.6 59 66.1
Oeu062077.1 Olea europaea HOM05D003775 ORTHO05D004314 9.7e-11 70.5 41 80.5
Lalb_Chr01g0000601 Lupinus albus HOM05D003775 ORTHO05D004314 9.1e-09 63.9 59 62.7
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 1.5e-08 63.2 57 54.4
Pp3c16_4180 Physcomitrium patens HOM05D003775 ORTHO05D004314 3.4e-08 62.0 53 50.9
PGSC0003DMG400012744 Solanum tuberosum HOM05D003775 ORTHO05D004314 2.9e-07 58.9 43 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2031 Anthoceros agrestis HOM05D003775 ORTHO05D004314 5.5e-06 54.7 52 46.2


User provided reference genes

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