Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00615 Davidia involucrata HOM05D003775 ORTHO05D004314 3.7e-111 405.6 245 100.0
Dinv04593 Davidia involucrata HOM05D003775 ORTHO05D004314 2.8e-95 352.8 185 96.8
Dinv39690 Davidia involucrata HOM05D003775 ORTHO05D004314 6.5e-92 341.7 185 93.5
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 5.8e-72 275.4 187 78.1
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 9.9e-48 194.9 186 60.2
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 9.9e-48 194.9 186 60.2
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 8.7e-36 155.2 186 51.1
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 1.6e-34 151.0 182 51.1
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 2.1e-34 150.6 182 51.6
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 3.1e-33 146.7 156 53.8
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 1.1e-30 138.3 186 45.2
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 7.9e-29 132.1 198 46.5
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 5.1e-28 129.4 187 47.1
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 3.1e-25 120.2 165 48.5
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 4.0e-25 119.8 189 42.9
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 8.4e-23 112.1 188 44.7
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 2.5e-22 110.5 186 43.0
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 3.2e-22 110.2 186 43.0
Haze_03108 Corylus avellana HOM05D003775 ORTHO05D004314 4.2e-22 109.8 188 44.1
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 7.1e-22 109.0 198 39.4
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 3.5e-21 106.7 188 41.5
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 1.0e-20 105.1 186 36.0
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 1.8e-20 104.4 187 43.3
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 2.3e-20 104.0 187 40.1
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 5.1e-20 102.8 188 38.8
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 6.7e-20 102.4 181 43.6
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 9.6e-19 98.6 187 36.9
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 1.6e-18 97.8 186 41.4
Prupe.6G151000 Prunus persica HOM05D003775 ORTHO05D004314 1.6e-18 97.8 166 44.0
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 2.1e-18 97.4 196 40.3
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 2.1e-18 97.4 186 39.2
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 1.4e-17 94.7 186 37.1
Nn2g15064 Nelumbo nucifera HOM05D003775 ORTHO05D004314 1.4e-17 94.7 139 43.2
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 4.1e-17 93.2 187 40.1
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 3.8e-15 86.7 186 35.5
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 1.4e-14 84.7 163 39.9
HanXRQChr01g0020841 Helianthus annuus HOM05D003775 ORTHO05D004314 1.9e-14 84.3 121 39.7
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 2.5e-14 84.0 165 38.8
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 4.2e-14 83.2 195 37.9
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 4.2e-14 83.2 163 39.9
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 9.3e-14 82.0 186 36.0
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 9.3e-14 82.0 156 37.2
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 1.6e-13 81.3 163 39.3
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 2.1e-13 80.9 192 37.5
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 2.7e-13 80.5 163 39.3
AUR62014380 Chenopodium quinoa HOM05D003775 ORTHO05D004314 3.6e-13 80.1 186 36.6
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 4.6e-13 79.7 187 38.0
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 6.1e-13 79.3 188 38.8
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 6.1e-13 79.3 172 37.8
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 5.1e-12 76.3 123 44.7
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 6.7e-12 75.9 196 30.1
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 1.9e-11 74.3 190 37.9
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 2.5e-11 73.9 188 36.7
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 3.3e-11 73.6 187 35.8
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 5.7e-11 72.8 186 35.5
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 9.7e-11 72.0 192 35.4
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.6e-10 71.2 163 35.6
Ah.05g171640 Amaranthus hybridus HOM05D003775 ORTHO05D004314 2.2e-10 70.9 186 32.8
DCAR_002120 Daucus carota HOM05D003775 ORTHO05D004314 3.7e-10 70.1 188 35.6
Prupe.3G154500 Prunus persica HOM05D003775 ORTHO05D004314 3.7e-10 70.1 142 38.0
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 8.2e-10 68.9 170 32.4
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 1.1e-09 68.6 191 34.0
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 2.4e-09 67.4 178 32.0
DCAR_031617 Daucus carota HOM05D003775 ORTHO05D004314 3.1e-09 67.0 185 31.4
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 4.1e-09 66.6 188 31.9
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 4.1e-09 66.6 188 36.2
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 5.3e-09 66.2 188 30.9
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 6.9e-09 65.9 186 34.4
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 6.9e-09 65.9 178 31.5
PSO339G4517 Papaver somniferum HOM05D003775 ORTHO05D004314 2.0e-08 64.3 184 31.5
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 1.0e-07 62.0 186 31.7
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 2.2e-07 60.8 187 34.8
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 6.5e-07 59.3 134 38.1
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 6.5e-07 59.3 188 33.0
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 6.5e-07 59.3 187 34.2
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 8.5e-07 58.9 184 31.0
MELO3C011731.2 Cucumis melo HOM05D003775 ORTHO05D004314 1.4e-06 58.2 134 38.1
Lalb_Chr01g0000591 Lupinus albus HOM05D003775 ORTHO05D004314 1.4e-06 58.2 190 34.7
MD02G1296600 Malus domestica HOM05D003775 ORTHO05D004314 1.9e-06 57.8 101 39.6
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 3.2e-06 57.0 131 36.6
THA.LOC104826715 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 3.2e-06 57.0 193 33.2
AL7G21200 Arabidopsis lyrata HOM05D003775 ORTHO05D004314 4.2e-06 56.6 198 32.3
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 4.2e-06 56.6 185 33.0
Aa31LG2G19490 Aethionema arabicum HOM05D003775 ORTHO05D004314 5.5e-06 56.2 166 36.1
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 7.2e-06 55.8 185 32.4
Lsat_1_v5_gn_1_98220 Lactuca sativa HOM05D003775 ORTHO05D004314 7.2e-06 55.8 160 31.9


User provided reference genes

Program Settings