Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1919.4 972 100.0
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1638.6 929 88.1
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1464.1 931 78.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1463.0 944 77.6
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1457.2 930 78.4
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1437.6 930 77.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1433.7 930 75.5
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1422.1 945 75.0
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1415.2 939 75.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1407.5 923 75.7
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1400.2 915 75.6
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1394.8 989 70.8
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1382.5 934 73.9
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1373.6 961 73.0
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1365.5 932 73.0
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1360.5 944 71.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1357.0 929 74.1
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1356.7 925 73.0
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1352.8 929 73.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1350.5 915 72.3
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1349.7 929 73.3
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1343.6 930 72.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1338.2 922 71.6
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1337.8 962 69.5
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1326.6 915 71.8
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1325.8 931 71.3
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1323.9 793 81.7
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1319.7 915 71.3
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1319.3 915 70.7
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1315.1 922 71.3
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1309.3 930 70.0
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1306.6 991 66.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1306.6 916 72.1
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1304.7 928 70.5
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1304.7 940 68.9
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1304.7 924 69.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1304.3 930 70.5
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1303.1 915 70.9
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1300.0 915 70.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1298.9 915 69.6
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1296.2 929 70.8
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1293.5 916 70.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1293.1 915 70.2
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1286.2 916 68.7
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1283.5 915 68.9
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1280.8 922 71.4
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 922 68.8
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1273.5 930 70.2
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1273.1 930 70.1
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1272.7 934 69.2
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1270.4 922 69.0
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1269.6 912 68.8
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 929 70.7
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1265.0 939 67.5
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1262.7 930 69.6
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1262.3 933 68.3
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1260.7 937 67.9
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 933 68.0
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1254.6 828 74.9
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 927 66.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1253.0 933 68.0
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1251.5 927 66.8
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1244.2 915 68.0
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1240.7 915 68.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 915 67.7
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1234.6 933 68.2
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1232.2 933 67.1
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1231.1 839 72.1
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1230.7 1012 62.7
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1230.3 918 66.8
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1229.5 936 67.0
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1228.4 916 68.0
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1224.5 950 66.3
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1220.7 935 65.8
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1213.4 922 65.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1201.4 912 66.2
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1201.0 841 70.0
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1199.9 912 66.2
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 913 66.5
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 921 66.8
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 921 66.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1197.2 922 66.1
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1195.6 978 62.4
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1195.3 917 66.3
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1194.5 921 65.6
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1193.7 999 61.8
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1191.8 912 66.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1190.3 913 66.9
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1185.2 769 76.5
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1180.6 909 66.0
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1170.2 910 65.5
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1158.7 914 64.3
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1154.8 916 64.6
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1146.0 918 64.2
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1145.2 934 62.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1135.6 826 69.2
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1134.8 920 63.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1134.8 756 72.6
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1126.7 919 61.9
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1123.2 927 62.5
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1114.4 860 65.6
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1105.9 773 72.7
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1100.5 768 73.0
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1077.4 920 60.0
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 9.5e-309 1063.5 756 70.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.4e-298 1028.5 958 56.9
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.9e-297 1025.4 665 75.8
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 3.3e-293 1011.9 949 55.4
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 4.0e-283 978.4 717 68.6
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.9e-264 916.4 930 54.0
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 4.2e-256 888.6 906 51.8
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.1e-252 876.3 931 50.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 9.7e-245 850.9 964 48.7
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 5.0e-241 838.6 596 70.1
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 5.2e-222 775.4 908 46.4
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-214 750.7 410 92.4
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 4.7e-199 699.1 616 57.6
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.3e-180 637.9 790 45.4
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.5e-176 623.6 647 53.0
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 4.7e-167 592.8 458 63.3
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 3.2e-155 553.5 668 48.7
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.1e-151 540.8 536 54.3
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.6e-122 443.7 331 64.7
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.5e-107 395.2 298 65.8
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 6.5e-100 369.8 1144 27.0
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.3e-84 318.9 232 68.1
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.3e-84 318.2 382 48.2
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.6e-72 278.1 261 57.9
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.4e-71 273.5 257 57.6
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.4e-62 243.8 211 60.7
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.8e-61 240.0 225 57.8
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.3e-60 239.2 249 51.8
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.7e-53 214.9 223 53.4
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.7e-53 214.9 223 53.4
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.7e-53 214.9 223 53.4
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.0e-52 213.0 223 52.9
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.3e-52 211.8 223 52.9
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-48 199.5 242 47.5
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 5.4e-46 190.7 381 35.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 5.6e-43 180.6 223 48.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.1e-38 163.7 177 52.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.3e-31 142.9 359 30.6
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-24 119.4 240 34.2
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.8e-24 117.5 103 60.2
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.0e-21 107.5 81 61.7
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 8.7e-20 103.6 300 28.7
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 6.9e-17 94.0 55 80.0
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 2.5e-14 85.5 58 60.3
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 3.2e-06 58.5 54 53.7


User provided reference genes

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