Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00562 Davidia involucrata HOM05D001087 ORTHO05D005406 9.5e-242 839.7 416 100.0
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 5.7e-61 239.2 200 65.5
Lj7A620G42 Lonicera japonica HOM05D001087 ORTHO05D005406 1.7e-60 237.7 161 73.3
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 2.2e-60 237.3 163 73.6
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 2.4e-59 233.8 163 75.5
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 2.4e-59 233.8 161 75.2
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 2.0e-58 230.7 165 70.9
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 1.7e-57 227.6 163 72.4
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 5.0e-57 226.1 163 72.4
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 8.5e-57 225.3 163 70.6
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 8.5e-57 225.3 163 69.3
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.1e-56 224.9 163 71.2
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 1.5e-56 224.6 163 72.4
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 5.5e-56 222.6 165 70.9
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 7.2e-56 222.2 163 71.8
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 7.2e-56 222.2 163 69.9
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 7.2e-56 222.2 163 69.9
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 9.4e-56 221.9 163 71.2
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 1.2e-55 221.5 163 71.2
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.2e-55 221.5 163 71.2
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 1.6e-55 221.1 163 69.9
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 2.7e-55 220.3 163 69.3
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 3.6e-55 219.9 163 70.6
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 3.6e-55 219.9 164 70.7
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 4.7e-55 219.5 162 69.1
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 8.0e-55 218.8 164 71.3
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 8.0e-55 218.8 163 69.3
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.0e-54 218.4 163 69.3
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 2.3e-54 217.2 164 69.5
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 4.0e-54 216.5 163 68.7
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 4.0e-54 216.5 162 68.5
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 5.2e-54 216.1 163 68.1
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 1.2e-53 214.9 163 68.7
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 1.5e-53 214.5 163 68.7
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 1.5e-53 214.5 163 68.7
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 2.0e-53 214.2 163 68.1
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 2.6e-53 213.8 163 68.1
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 5.7e-53 212.6 189 61.9
Peaxi162Scf00420g00945 Petunia axillaris HOM05D001087 ORTHO05D005406 5.7e-53 212.6 168 66.7
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 7.5e-53 212.2 162 64.2
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 7.5e-53 212.2 163 68.1
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 7.5e-53 212.2 163 67.5
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 7.5e-53 212.2 166 69.3
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 7.5e-53 212.2 162 69.8
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.3e-52 211.5 162 67.9
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 2.2e-52 210.7 162 69.8
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 2.8e-52 210.3 162 67.3
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 2.8e-52 210.3 162 67.3
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 3.7e-52 209.9 163 67.5
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 6.3e-52 209.1 163 66.3
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 1.1e-51 208.4 162 66.0
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.1e-51 208.4 161 67.1
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 1.1e-51 208.4 161 67.1
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.4e-51 208.0 162 66.0
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 1.4e-51 208.0 163 67.5
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 1.8e-51 207.6 162 68.5
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 2.4e-51 207.2 162 66.0
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 4.1e-51 206.5 163 66.3
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 5.3e-51 206.1 163 66.9
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 5.3e-51 206.1 162 66.0
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 1.2e-50 204.9 164 64.0
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 1.6e-50 204.5 182 61.5
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 2.0e-50 204.1 163 66.3
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 2.7e-50 203.8 163 65.6
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 2.7e-50 203.8 161 62.1
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 2.7e-50 203.8 163 67.5
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 1.7e-49 201.1 163 65.6
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 3.8e-49 199.9 198 57.6
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 3.8e-49 199.9 163 65.6
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 4.2e-48 196.4 162 66.0
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.2e-47 194.9 189 58.2
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 4.7e-47 193.0 162 61.1
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.0e-46 190.3 163 59.5
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 8.8e-46 188.7 163 59.5
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.7e-44 184.5 193 55.4
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 1.4e-43 181.4 162 60.5
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 5.9e-42 176.0 161 57.8
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 7.7e-42 175.6 161 57.8
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 7.7e-42 175.6 162 59.3
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 1.0e-41 175.3 161 57.8
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 2.3e-41 174.1 161 57.8
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 8.6e-41 172.2 161 57.1
Dinv13568 Davidia involucrata HOM05D000442 ORTHO05D001242 8.6e-41 172.2 111 78.4
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 1.1e-40 171.8 165 56.4
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 2.5e-40 170.6 162 57.4
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 2.5e-40 170.6 161 55.9
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 4.2e-40 169.9 161 56.5
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 4.2e-40 169.9 161 56.5
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 2.1e-39 167.5 161 55.9
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 2.1e-39 167.5 161 55.9
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 6.8e-38 162.5 164 57.3
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 1.2e-37 161.8 162 51.9
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 4.9e-36 156.4 163 52.1
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.4e-35 154.8 163 50.9
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.4e-35 154.8 163 50.9
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 4.0e-30 136.7 141 56.7
Peaxi162Scf00281g00313 Petunia axillaris HOM05D001087 ORTHO05D005406 5.4e-27 126.3 96 64.6
Nitab4.5_0002901g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 9.2e-27 125.6 115 59.1
Nitab4.5_0028800g0010 Nicotiana tabacum HOM05D001087 ORTHO05D005406 9.2e-27 125.6 155 49.0
DCAR_029488 Daucus carota HOM05D001087 ORTHO05D005406 2.3e-25 120.9 94 67.0
Peaxi162Scf00082g00223 Petunia axillaris HOM05D001087 ORTHO05D005406 8.6e-25 119.0 111 56.8
FAN25G2039 Fragaria x ananassa HOM05D001087 ORTHO05D005406 4.3e-24 116.7 97 62.9
DCAR_010349 Daucus carota HOM05D001087 ORTHO05D005406 9.8e-21 105.5 74 68.9
DCAR_024188 Daucus carota HOM05D000352 ORTHO05D001293 6.4e-20 102.8 68 73.5
DCAR_032217 Daucus carota HOM05D001087 ORTHO05D005406 6.4e-20 102.8 68 73.5
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 5.4e-19 99.8 162 42.0
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.3e-16 90.5 113 46.0
FAN04G2467 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.8e-15 87.4 49 87.8
SalBow1G1885 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.2e-15 86.3 75 58.7
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 1.1e-14 85.5 169 36.1
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 3.1e-14 84.0 87 56.3
SEGI_07298 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.2e-13 82.0 49 81.6
MBI14_g42933_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D012772 3.4e-13 80.5 78 53.8
FAN03G2103 Fragaria x ananassa HOM05D001087 ORTHO05D005406 9.9e-13 79.0 74 55.4
TAR381G0632 Trochodendron aralioides HOM05D000442 ORTHO05D001242 5.6e-08 63.2 115 40.0
Nitab4.5_0000519g0400 Nicotiana tabacum HOM05D001087 ORTHO05D005406 8.1e-07 59.3 35 85.7
Nitab4.5_0002901g0070 Nicotiana tabacum HOM05D001087 ORTHO05D005406 8.1e-07 59.3 35 85.7


User provided reference genes

Program Settings