Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 3.4e-86 321.6 163 100.0
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 4.5e-22 108.6 57 100.0
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 1.9e-20 103.2 53 100.0
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.3e-20 102.1 57 91.2
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.0e-14 83.2 57 70.2
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 6.0e-14 81.6 57 68.4
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-13 80.5 59 71.2
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.7e-13 80.1 55 69.1
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.3e-13 79.7 57 70.2
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 2.3e-13 79.7 57 68.4
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.0e-13 79.3 55 72.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 3.9e-13 79.0 57 63.2
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 5.0e-13 78.6 51 70.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-12 77.0 56 67.9
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.5e-12 77.0 56 69.6
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.5e-12 77.0 56 67.9
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-12 76.6 56 67.9
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.9e-12 76.6 57 68.4
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 2.5e-12 76.3 56 67.9
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.5e-12 76.3 57 64.9
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.5e-12 76.3 57 64.9
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-12 75.9 56 66.1
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-12 75.9 56 66.1
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-12 75.9 56 66.1
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.3e-12 75.9 57 63.2
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 3.3e-12 75.9 57 63.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 4.3e-12 75.5 57 63.2
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.3e-12 75.5 57 63.2
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.3e-12 75.5 57 63.2
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.3e-12 75.5 57 63.2
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.3e-12 75.5 57 63.2
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 9.5e-12 74.3 55 67.3
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.2e-11 73.9 56 66.1
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-11 73.6 56 64.3
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 1.6e-11 73.6 57 61.4
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 2.1e-11 73.2 56 67.9
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 2.1e-11 73.2 57 59.6
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.1e-11 73.2 52 67.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 2.8e-11 72.8 67 58.2
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 2.8e-11 72.8 56 62.5
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 2.8e-11 72.8 57 59.6
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 2.8e-11 72.8 57 59.6
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.8e-11 72.8 57 61.4
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.8e-11 72.8 57 61.4
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 4.7e-11 72.0 57 59.6
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.7e-11 72.0 56 62.5
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.2e-11 71.6 57 61.4
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 8.0e-11 71.2 56 64.3
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.1e-10 70.9 56 60.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.4e-10 70.5 57 59.6
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.8e-10 70.1 55 61.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-10 69.3 57 61.4
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-10 69.3 57 61.4
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 3.1e-10 69.3 55 63.6
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 3.1e-10 69.3 57 56.1
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 3.1e-10 69.3 56 60.7
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 4.0e-10 68.9 55 60.0
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.0e-10 68.9 56 60.7
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 6.8e-10 68.2 56 58.9
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.8e-10 68.2 56 58.9
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 8.9e-10 67.8 57 59.6
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.5e-09 67.0 67 52.2
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.6e-09 66.2 55 58.2
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 3.4e-09 65.9 55 58.2
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 3.4e-09 65.9 55 58.2
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 4.4e-09 65.5 60 53.3
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 4.4e-09 65.5 57 56.1
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 4.4e-09 65.5 57 56.1
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 7.5e-09 64.7 55 58.2
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.3e-08 63.9 62 48.4
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.3e-08 63.9 48 62.5
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.3e-08 63.9 57 52.6
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.7e-08 63.5 70 41.4
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.7e-08 63.5 57 52.6
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 2.9e-08 62.8 67 44.8
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 2.9e-08 62.8 62 46.8
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 3.7e-08 62.4 67 44.8
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 6.4e-08 61.6 67 43.3
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 8.3e-08 61.2 48 62.5
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.1e-07 60.8 56 53.6
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.4e-07 60.5 55 54.5
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.4e-07 60.5 56 55.4
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 2.4e-07 59.7 53 52.8
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 4.1e-07 58.9 55 50.9
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 5.4e-07 58.5 47 59.6
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 5.4e-07 58.5 55 49.1
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 5.4e-07 58.5 56 48.2
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 5.4e-07 58.5 56 50.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 9.2e-07 57.8 52 53.8
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 9.2e-07 57.8 48 58.3
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.2e-06 57.4 48 62.5
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.2e-06 57.4 47 53.2
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.6e-06 57.0 46 56.5
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.6e-06 57.0 55 47.3
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 2.1e-06 56.6 56 44.6
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.7e-06 56.2 51 52.9
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 4.6e-06 55.5 55 45.5
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 6.0e-06 55.1 46 54.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 6.0e-06 55.1 45 57.8
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 7.8e-06 54.7 45 57.8


User provided reference genes

Program Settings