Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 8.4e-137 490.3 247 100.0
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 8.8e-86 320.9 162 100.0
Dinv32385 Davidia involucrata HOM05D026811 ORTHO05D181608 1.1e-38 164.5 97 84.5
Dinv32386 Davidia involucrata HOM05D026811 ORTHO05D182050 2.1e-23 113.6 97 63.9
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 2.2e-20 103.6 53 100.0
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.9e-19 100.5 70 74.3
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.1e-14 83.2 75 56.0
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 4.1e-14 82.8 114 46.5
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.6e-13 80.1 67 61.2
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.4e-13 79.7 75 56.0
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 4.5e-13 79.3 51 70.6
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.5e-13 79.3 74 54.1
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 7.6e-13 78.6 74 55.4
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.0e-12 78.2 60 63.3
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.7e-12 77.4 73 56.2
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.9e-12 76.6 75 52.0
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 2.9e-12 76.6 114 39.5
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 3.8e-12 76.3 75 50.7
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.8e-12 76.3 75 50.7
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.8e-12 76.3 75 50.7
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.8e-12 76.3 75 50.7
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.8e-12 76.3 75 50.7
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.8e-12 76.3 75 54.7
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.4e-12 75.1 112 40.2
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 8.4e-12 75.1 52 65.4
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.1e-11 74.7 76 52.6
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.1e-11 74.7 83 50.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.1e-11 74.7 117 41.0
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.1e-11 74.7 52 69.2
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-11 74.3 110 40.9
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.4e-11 74.3 112 40.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.4e-11 74.3 112 40.2
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 1.4e-11 74.3 75 49.3
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.4e-11 74.3 74 52.7
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-11 73.6 110 40.9
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.5e-11 73.6 51 68.6
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-11 73.2 117 41.9
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-11 73.2 115 39.1
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-11 73.2 117 41.9
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.2e-11 72.8 75 48.0
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.5e-11 72.4 75 49.3
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 7.2e-11 72.0 75 49.3
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.3e-11 71.6 100 41.0
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 9.3e-11 71.6 114 37.7
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-10 71.2 52 65.4
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 1.2e-10 71.2 114 39.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.2e-10 71.2 114 37.7
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.6e-10 70.9 75 48.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.6e-10 70.9 60 56.7
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.6e-10 70.9 60 56.7
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.7e-10 70.1 75 46.7
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 3.5e-10 69.7 114 38.6
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 3.5e-10 69.7 53 60.4
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.1e-10 68.9 52 63.5
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 6.1e-10 68.9 52 65.4
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 7.9e-10 68.6 52 63.5
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.3e-09 67.8 59 54.2
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.8e-09 67.4 75 48.0
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.8e-09 67.4 52 61.5
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.3e-09 67.0 75 46.7
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 3.0e-09 66.6 117 37.6
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 5.1e-09 65.9 91 41.8
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 8.7e-09 65.1 75 45.3
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 8.7e-09 65.1 114 36.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 8.7e-09 65.1 91 41.8
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 8.7e-09 65.1 91 41.8
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 8.7e-09 65.1 52 55.8
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.5e-08 64.3 47 63.8
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.5e-08 64.3 53 56.6
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.9e-08 63.9 53 56.6
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.9e-08 63.9 53 56.6
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.5e-08 63.5 51 58.8
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 2.5e-08 63.5 60 50.0
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 3.3e-08 63.2 54 51.9
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 3.3e-08 63.2 55 50.9
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 3.3e-08 63.2 90 40.0
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 4.3e-08 62.8 54 51.9
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 4.3e-08 62.8 66 45.5
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 4.3e-08 62.8 112 33.0
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 7.4e-08 62.0 54 50.0
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 7.4e-08 62.0 76 40.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 9.7e-08 61.6 60 48.3
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.8e-07 60.1 46 65.2
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 4.8e-07 59.3 54 48.1
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 6.3e-07 58.9 47 59.6
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 6.3e-07 58.9 53 54.7
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 8.2e-07 58.5 75 38.7
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 8.2e-07 58.5 48 52.1
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.1e-06 58.2 52 44.2
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.1e-06 58.2 52 53.8
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.1e-06 58.2 52 53.8
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.1e-06 58.2 48 58.3
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.8e-06 57.4 47 63.8
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.8e-06 57.4 46 56.5
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.4e-06 57.0 51 52.9
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 2.4e-06 57.0 50 52.0
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 3.1e-06 56.6 52 50.0
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 5.3e-06 55.8 49 61.2
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 5.3e-06 55.8 45 57.8
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 6.9e-06 55.5 46 54.3
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 6.9e-06 55.5 45 57.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 6.9e-06 55.5 52 50.0


User provided reference genes

Program Settings