Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.1e-299 1031.6 513 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 9.4e-223 776.9 512 78.7
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.3e-216 756.5 510 77.6
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 1.5e-204 716.5 513 73.5
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 9.7e-204 713.8 511 73.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 9.7e-204 713.8 511 73.6
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-199 700.3 511 71.8
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 8.0e-198 694.1 513 72.5
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.8e-197 690.6 513 71.3
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.6e-196 689.1 513 71.2
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-195 686.4 513 70.8
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 2.8e-195 685.6 514 69.3
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 5.0e-192 674.9 510 69.0
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 2.5e-191 672.5 510 68.2
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.2e-191 672.2 511 69.9
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 5.2e-189 664.8 509 69.7
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-186 655.6 512 68.8
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 2.7e-185 652.5 512 67.2
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.7e-185 652.5 511 68.3
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 6.6e-184 647.9 514 67.3
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-183 645.6 511 67.7
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 5.6e-183 644.8 505 69.1
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.0e-181 638.6 513 66.9
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 3.7e-179 632.1 444 73.2
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 6.6e-176 621.3 512 66.0
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 2.5e-175 619.4 511 65.6
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-174 616.7 513 67.1
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-174 616.7 513 67.1
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-174 616.7 513 67.1
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-174 616.7 513 67.1
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.6e-174 616.7 513 67.1
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 2.8e-174 615.9 511 64.0
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 4.7e-174 615.1 511 64.0
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-173 613.6 512 64.3
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 8.9e-173 610.9 511 63.8
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 4.4e-172 608.6 514 63.0
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-171 606.3 513 64.9
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.1e-170 604.0 506 63.6
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 3.0e-168 595.9 511 64.2
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.5e-164 581.3 458 68.1
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.4e-162 577.0 443 67.5
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 4.6e-161 572.0 512 61.5
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-159 565.8 518 61.8
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.5e-159 564.3 407 71.5
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-156 557.4 512 60.7
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 5.1e-152 542.0 484 61.2
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 6.2e-150 535.0 424 68.2
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 3.1e-149 532.7 511 59.1
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 8.9e-149 531.2 513 55.9
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-148 530.4 428 66.6
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 4.4e-148 528.9 339 78.5
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.9e-147 526.2 511 57.5
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.8e-142 509.6 517 57.1
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.6e-129 467.2 482 55.4
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-122 444.5 411 60.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.4e-117 427.6 510 51.2
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 3.4e-116 422.9 355 66.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.5e-113 412.9 448 53.6
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 2.4e-109 400.2 334 63.2
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 5.3e-109 399.1 395 57.0
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 4.5e-108 396.0 463 50.5
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.1e-105 385.6 509 47.7
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 3.0e-104 383.3 310 64.8
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 4.2e-98 362.8 232 75.9
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-97 361.3 303 65.7
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-97 360.9 436 50.9
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.1e-97 360.5 294 64.6
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.5e-79 301.2 280 63.2
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 7.5e-79 298.9 212 67.9
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 7.5e-79 298.9 212 67.9
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 7.5e-79 298.9 212 67.9
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 7.5e-79 298.9 212 67.9
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 7.5e-79 298.9 212 67.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-75 288.5 266 58.6
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-75 288.5 266 58.6
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 2.2e-70 270.8 167 79.6
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.3e-67 261.5 184 70.7
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.9e-67 260.4 302 53.3
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-65 255.0 268 53.7
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.6e-65 254.6 158 79.7
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.0e-64 250.4 321 47.7
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.2e-62 244.2 321 45.2
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 1.1e-61 241.9 144 80.6
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 9.2e-61 238.8 158 75.3
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 3.5e-60 236.9 216 62.0
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 4.3e-58 229.9 144 79.2
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.4e-55 220.3 235 51.1
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-54 218.0 219 55.3
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-54 217.6 150 73.3
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 8.3e-54 215.7 458 38.4
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.6e-52 211.5 211 57.8
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 2.7e-52 210.7 125 82.4
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 1.4e-45 188.3 162 61.7
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 7.8e-44 182.6 120 74.2
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 1.3e-43 181.8 136 64.0
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.3e-43 181.0 119 73.1
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 4.3e-42 176.8 125 72.0
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 4.7e-41 173.3 119 73.1
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.3e-40 171.0 115 74.8
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 6.8e-40 169.5 143 63.6
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 2.6e-39 167.5 114 72.8
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.2e-38 164.5 136 65.4
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.1e-37 159.5 133 64.7
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-35 153.7 138 67.4
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.6e-34 149.8 113 72.6
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-33 148.3 132 62.9
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.8e-33 147.5 121 62.8
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 1.4e-32 145.2 116 57.8
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 4.0e-32 143.7 85 80.0
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.5e-31 141.7 177 48.6
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.0e-31 141.4 132 61.4
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 7.6e-31 139.4 102 63.7
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 1.4e-29 135.2 141 58.9
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 5.1e-27 126.7 405 28.9
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.5e-26 124.4 85 75.3
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-25 121.7 112 64.3
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-25 121.7 163 44.8
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 8.1e-25 119.4 108 63.0
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 1.8e-24 118.2 74 71.6
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.1e-24 117.5 117 58.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.1e-24 117.5 115 52.2
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 2.6e-23 114.4 82 64.6
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 5.8e-23 113.2 100 65.0
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 1.7e-22 111.7 107 54.2
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.9e-22 110.9 82 63.4
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.1e-21 106.3 76 71.1
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 5.1e-19 100.1 82 62.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 8.7e-19 99.4 429 26.3
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.6e-17 95.1 77 63.6
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 2.8e-17 94.4 88 69.3
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 2.4e-16 91.3 68 73.5
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.3e-16 90.1 66 63.6
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 4.5e-15 87.0 53 86.8
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 2.9e-14 84.3 67 71.6
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 3.5e-12 77.4 58 65.5
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.3e-11 74.7 45 73.3
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 8.7e-11 72.8 46 76.1
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 1.9e-10 71.6 42 71.4
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 5.6e-10 70.1 63 60.3
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 7.4e-10 69.7 84 48.8
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 2.8e-09 67.8 94 46.8
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 3.7e-09 67.4 58 62.1
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 3.7e-09 67.4 58 62.1
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.7e-09 67.4 62 51.6
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.2e-09 66.2 95 40.0
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 1.1e-08 65.9 86 47.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 1.4e-08 65.5 83 45.8
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 1.8e-08 65.1 35 85.7
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 1.8e-08 65.1 56 64.3
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 2.4e-08 64.7 60 51.7
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.3e-08 63.5 56 64.3
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 9.0e-08 62.8 42 81.0
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 3.4e-07 60.8 52 59.6
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 4.5e-07 60.5 47 55.3


User provided reference genes

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