Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 2.8e-154 548.5 266 100.0
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 1.2e-149 533.1 266 97.7
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.9e-147 525.8 266 97.0
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 5.7e-147 524.2 266 96.2
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 5.7e-147 524.2 266 96.2
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 9.7e-147 523.5 266 96.6
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 9.7e-147 523.5 266 96.2
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 9.7e-147 523.5 266 96.2
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.2e-146 522.3 266 96.2
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 6.3e-146 520.8 266 95.5
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 95.5
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.1e-145 520.0 263 96.2
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 2.4e-145 518.8 266 95.5
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 4.1e-145 518.1 266 95.5
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.2e-144 516.5 266 94.7
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.2e-144 516.5 266 94.7
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.6e-144 515.4 266 95.1
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 2.6e-144 515.4 266 95.1
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 3.4e-144 515.0 266 95.1
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-143 513.1 264 95.1
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.3e-143 513.1 266 95.1
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 94.0
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 2.2e-143 512.3 266 94.7
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 94.0
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 6.5e-143 510.8 264 94.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 4.6e-141 504.6 263 93.2
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 6.1e-141 504.2 266 94.0
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.1e-139 500.0 252 97.2
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 6.9e-137 490.7 252 96.0
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.1e-137 490.3 252 95.6
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.5e-136 489.6 253 94.9
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.6e-136 488.8 252 95.2
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-135 486.5 252 94.8
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 5.2e-132 474.6 265 90.2
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 4.4e-131 471.5 243 95.5
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 4.4e-131 471.5 243 95.5
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 9.7e-131 470.3 265 88.3
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.3e-130 469.9 266 88.3
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.7e-130 469.5 264 88.6
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 4.5e-128 461.5 240 93.8
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 5.9e-128 461.1 239 95.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.3e-127 459.9 240 93.3
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-127 459.1 263 84.8
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.3e-122 443.4 262 83.6
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.1e-121 440.3 253 87.4
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 9.4e-118 427.2 261 82.0
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.7e-112 409.1 209 94.7
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 4.5e-112 408.3 211 95.7
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 4.5e-112 408.3 211 95.7
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.8e-111 405.2 209 95.2
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 4.2e-110 401.7 213 94.4
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 9.8e-107 390.6 252 79.8
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.8e-107 390.6 257 78.6
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.1e-105 385.6 202 94.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 2.9e-103 379.0 187 99.5
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.6e-103 377.9 209 90.4
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.0e-100 369.0 209 87.1
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-89 332.8 184 89.7
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 3.4e-83 312.4 161 95.0
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 4.6e-80 302.0 156 94.9
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.0e-76 288.9 159 89.9
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 6.8e-76 288.1 150 95.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 6.4e-74 281.6 247 65.2
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.2e-73 279.3 145 93.8
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.1e-73 278.1 145 94.5
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.6e-72 276.9 148 92.6
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 2.7e-72 276.2 148 91.9
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 6.6e-71 271.6 209 68.4
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-68 263.1 196 71.9
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 2.2e-66 256.5 279 48.0
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.1e-64 250.0 130 93.8
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 2.8e-61 239.6 119 96.6
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 4.8e-61 238.8 122 95.1
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 1.1e-57 227.6 120 95.8
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-56 221.5 160 73.8
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.6e-53 213.8 108 96.3
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-51 207.6 116 87.1
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.2e-50 203.4 103 96.1
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 5.5e-49 198.7 113 91.2
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 9.3e-49 198.0 101 97.0
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.3e-47 194.1 105 92.4
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 7.4e-46 188.3 101 88.1
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.7e-42 177.2 165 60.6
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 3.8e-42 176.0 210 48.1
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-41 174.1 85 95.3
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-38 162.2 184 52.7
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-36 157.9 81 91.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 3.1e-36 156.4 258 34.1
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.7e-34 150.6 88 84.1
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-33 146.7 108 70.4
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 3.6e-32 142.9 101 72.3
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-31 141.0 149 55.0
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 3.0e-31 139.8 82 87.8
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 3.3e-30 136.3 82 80.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-29 134.0 76 84.2
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 2.2e-26 123.6 154 48.1
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-25 120.2 79 78.5
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 3.2e-25 119.8 63 87.3
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 6.1e-24 115.5 58 94.8
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 2.6e-22 110.2 68 76.5
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 1.3e-21 107.8 56 91.1
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 4.1e-20 102.8 172 41.9
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-19 99.8 64 78.1
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 1.9e-17 94.0 65 72.3
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-17 94.0 48 87.5
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-17 92.4 67 71.6
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 4.7e-16 89.4 119 44.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 5.2e-15 85.9 61 63.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-14 83.6 40 87.5
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 9.7e-14 81.6 65 58.5
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 9.7e-14 81.6 53 84.9
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-13 80.5 53 83.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 84 51.2
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.8e-13 79.3 56 76.8
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 8.2e-13 78.6 41 82.9
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.6e-11 74.3 59 69.5
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.2e-09 66.6 29 100.0
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 3.2e-09 66.6 118 34.7
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-08 64.7 31 87.1
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 2.7e-08 63.5 31 90.3
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-07 59.7 30 80.0
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 5.2e-07 59.3 32 81.2
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.2e-06 58.2 31 80.6
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.5e-06 55.5 74 41.9


User provided reference genes

Program Settings