Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 5.4e-215 750.7 384 100.0
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 1.1e-154 550.4 329 86.3
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 3.9e-133 478.8 254 95.7
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 4.8e-131 471.9 254 94.9
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 7.0e-130 468.0 266 90.2
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 6.5e-128 461.5 254 92.5
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.3e-125 453.0 241 95.4
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 4.0e-125 452.2 241 95.4
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.6e-124 449.5 383 66.6
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.6e-124 449.5 383 66.6
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 3.3e-124 449.1 227 100.0
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 5.7e-124 448.4 241 94.6
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 2.2e-123 446.4 404 63.6
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 9.1e-122 441.0 254 89.8
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 7.2e-119 431.4 253 88.9
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 1.4e-117 427.2 253 88.1
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 2.8e-115 419.5 258 84.9
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 9.1e-114 414.5 257 84.4
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.0e-112 411.0 254 83.9
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.0e-112 411.0 254 83.9
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 1.9e-111 406.8 252 83.3
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 1.9e-111 406.8 252 83.3
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 1.9e-111 406.8 252 83.3
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 1.9e-111 406.8 252 83.3
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 1.9e-111 406.8 252 83.3
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.1e-110 403.3 215 94.9
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 2.7e-110 402.9 239 87.9
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 1.4e-109 400.6 253 82.6
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 6.6e-104 381.7 240 83.3
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 5.6e-103 378.6 369 59.6
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 2.6e-100 369.8 261 77.4
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 3.4e-100 369.4 261 77.0
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.8e-98 363.6 251 78.9
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 1.0e-96 357.8 253 76.7
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 1.7e-96 357.1 286 68.9
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 1.6e-94 350.5 269 70.3
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.0e-93 347.8 255 75.3
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 9.2e-90 334.7 198 87.4
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-88 330.9 225 78.7
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-88 330.9 225 78.7
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 2.3e-88 330.1 225 78.7
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.1e-87 327.8 229 78.2
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 4.7e-86 322.4 254 71.3
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.1e-85 321.2 265 66.8
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-85 320.5 195 84.1
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 7.1e-82 308.5 161 96.9
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 9.2e-82 308.1 215 78.6
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 6.0e-81 305.4 225 73.8
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 1.5e-76 290.8 154 96.1
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 5.2e-69 265.8 166 84.3
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 4.8e-54 216.1 241 53.9
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 5.3e-53 212.6 146 76.7
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 4.5e-52 209.5 166 70.5
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.2e-50 203.4 182 63.2
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 5.1e-48 196.1 145 72.4
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 6.7e-48 195.7 140 75.7
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-47 194.9 136 77.9
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 1.9e-47 194.1 134 79.1
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 3.7e-46 189.9 105 90.5
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 3.7e-46 189.9 252 49.6
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 5.3e-45 186.0 104 89.4
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 6.9e-45 185.7 236 49.2
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 1.2e-44 184.9 143 67.8
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 5.8e-44 182.6 136 75.7
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 2.9e-43 180.3 104 87.5
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 6.5e-43 179.1 104 88.5
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 2.1e-41 174.1 156 66.7
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 1.8e-40 171.0 131 70.2
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 2.5e-39 167.2 89 92.1
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 7.4e-39 165.6 128 73.4
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 1.3e-38 164.9 103 82.5
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 1.4e-37 161.4 107 74.8
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 2.6e-36 157.1 195 53.3
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 3.8e-35 153.3 97 77.3
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 6.5e-35 152.5 157 58.6
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 4.6e-33 146.4 151 57.0
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 7.9e-33 145.6 77 93.5
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 1.3e-30 138.3 120 65.8
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 1.3e-30 138.3 120 65.8
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 3.7e-30 136.7 91 80.2
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 6.3e-30 136.0 122 60.7
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 1.1e-29 135.2 122 60.7
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 1.1e-29 135.2 71 94.4
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 3.1e-29 133.7 201 43.8
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 5.3e-29 132.9 72 91.7
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 6.9e-29 132.5 72 90.3
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 1.9e-26 124.4 81 79.0
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.2e-26 123.6 63 95.2
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.2e-26 123.6 67 92.5
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 7.2e-26 122.5 141 52.5
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.6e-25 121.3 70 87.1
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 2.1e-25 120.9 117 60.7
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.0e-24 117.1 269 35.3
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 7.4e-23 112.5 100 61.0
GSVIVG01035307001 Vitis vinifera HOM05D000029 ORTHO05D001072 3.7e-22 110.2 106 60.4
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 4.1e-21 106.7 62 85.5
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 4.1e-21 106.7 57 93.0
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 6.9e-21 105.9 74 77.0
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 9.1e-21 105.5 87 69.0
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 2.6e-20 104.0 209 30.6
CARHR288260 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.3e-19 101.7 104 54.8
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.7e-19 101.3 61 85.2
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 1.7e-19 101.3 59 84.7
Dinv06717 Davidia involucrata HOM05D004291 ORTHO05D015100 2.5e-18 97.4 158 44.3
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 7.2e-18 95.9 60 78.3
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 3.9e-16 90.1 101 52.5
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 7.4e-15 85.9 47 91.5
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-13 82.0 59 74.6
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 2.4e-13 80.9 54 70.4
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 3.1e-13 80.5 46 82.6
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-12 78.6 75 50.7
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-12 78.6 75 50.7
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-12 78.6 75 50.7
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-12 78.6 75 50.7
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-12 78.6 75 50.7
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 1.6e-12 78.2 51 80.4
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 4.5e-12 76.6 105 41.9
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.7e-11 74.7 44 84.1
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 3.8e-11 73.6 45 77.8
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.5e-10 71.6 145 37.2
Cre01.g018800 Chlamydomonas reinhardtii HOM05D006604 ORTHO05D007974 1.9e-10 71.2 147 32.7
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 2.5e-10 70.9 46 78.3
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 2.5e-10 70.9 94 43.6
BolC1t03453H Brassica oleracea HOM05D013555 ORTHO05D007974 3.2e-10 70.5 113 41.6
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 5.5e-10 69.7 43 79.1
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 9.4e-10 68.9 99 44.4
SHI31173 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-09 66.6 174 33.3
SHI36366 Sapria himalayana HOM05D006604 ORTHO05D007974 2.3e-08 64.3 32 96.9
SHI12053 Sapria himalayana HOM05D006604 ORTHO05D007974 5.2e-08 63.2 42 78.6
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 8.8e-08 62.4 38 84.2
ClCG06G014670 Citrullus lanatus HOM05D006604 ORTHO05D007974 1.2e-07 62.0 36 86.1
ClCG07G016010 Citrullus lanatus HOM05D006604 ORTHO05D007974 1.5e-07 61.6 33 87.9
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 3.3e-07 60.5 34 88.2
SHI36696 Sapria himalayana HOM05D006604 ORTHO05D007974 5.7e-07 59.7 28 100.0
SHI50563 Sapria himalayana HOM05D006604 ORTHO05D007974 5.7e-07 59.7 28 100.0
SHI37563 Sapria himalayana HOM05D006604 ORTHO05D007974 7.5e-07 59.3 30 93.3
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 1.3e-06 58.5 36 83.3
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 6.3e-06 56.2 48 60.4
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 6.3e-06 56.2 48 60.4


User provided reference genes

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