Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032434 Daucus carota HOM05D005210 ORTHO05D010080 7.7e-99 364.0 209 100.0
PGR069G0003 Punica granatum HOM05D005210 ORTHO05D010080 3.3e-73 278.9 201 82.6
Nn1g09997 Nelumbo nucifera HOM05D005210 ORTHO05D010080 7.3e-73 277.7 196 84.2
Nn1g10098 Nelumbo nucifera HOM05D005210 ORTHO05D010080 7.3e-73 277.7 196 84.2
Nitab4.5_0000299g0070 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.0e-70 269.6 196 76.0
Phvul.005G088636 Phaseolus vulgaris HOM05D005210 ORTHO05D010080 1.1e-68 263.8 213 78.9
Cpa.g.sc38.57 Carica papaya HOM05D005210 ORTHO05D010080 1.1e-65 253.8 203 77.8
Lj6g0026306 Lotus japonicus HOM05D005210 ORTHO05D010080 1.4e-63 246.9 199 66.3
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 8.9e-63 244.2 175 85.1
Atru.chr1.3624 Acer truncatum HOM05D005210 ORTHO05D010080 2.0e-62 243.0 196 71.4
arahy.Tifrunner.gnm1.ann1.00SNP9 Arachis hypogaea HOM05D005210 ORTHO05D010080 1.9e-60 236.5 176 81.2
arahy.Tifrunner.gnm1.ann1.883WGW Arachis hypogaea HOM05D005210 ORTHO05D010080 1.9e-60 236.5 176 81.2
Nitab4.5_0006085g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010080 3.2e-60 235.7 195 69.7
Medtr6g012880 Medicago truncatula HOM05D005210 ORTHO05D010080 1.2e-59 233.8 197 64.0
TPR.G22447 Trifolium pratense HOM05D005210 ORTHO05D010080 1.5e-57 226.9 198 62.1
TPR.G32363 Trifolium pratense HOM05D005210 ORTHO05D010080 4.3e-57 225.3 198 62.6
MBI04_g15069_MAGBIO Magnolia biondii HOM05D005210 ORTHO05D010080 5.6e-57 224.9 181 76.8
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 9.5e-57 224.2 167 80.8
Lalb_Chr03g0038991 Lupinus albus HOM05D005210 ORTHO05D010080 5.2e-55 218.4 201 65.7
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 1.5e-54 216.9 196 65.8
Nitab4.5_0001761g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.6e-54 216.1 160 76.2
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 4.4e-54 215.3 155 85.8
AUR62004733 Chenopodium quinoa HOM05D005210 ORTHO05D010080 2.9e-53 212.6 198 56.6
AUR62037526 Chenopodium quinoa HOM05D005210 ORTHO05D010080 1.1e-52 210.7 198 55.1
CANSAT78G1777 Cannabis sativa HOM05D005210 ORTHO05D010080 9.2e-52 207.6 193 60.6
Ciclev10012798m.g Citrus clementina HOM05D005210 ORTHO05D010080 9.2e-52 207.6 199 62.3
Lalb_Chr02g0153671 Lupinus albus HOM05D005210 ORTHO05D010080 9.2e-52 207.6 181 68.5
Lsat_1_v5_gn_7_109460 Lactuca sativa HOM05D005210 ORTHO05D010080 2.1e-51 206.5 203 53.7
Oeu020894.1 Olea europaea HOM05D005210 ORTHO05D010080 2.7e-51 206.1 203 56.2
CAN.G1109.4 Capsicum annuum HOM05D005210 ORTHO05D010080 4.6e-51 205.3 143 80.4
VMungo0329G0007 Vigna mungo HOM05D005210 ORTHO05D010080 4.6e-51 205.3 182 68.7
Cfa023010 Carpinus fangiana HOM05D005210 ORTHO05D010080 1.0e-50 204.1 206 62.1
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-50 203.8 203 61.6
CAN.G110.12 Capsicum annuum HOM05D005210 ORTHO05D010080 3.3e-49 199.1 143 77.6
Potri.007G062102 Populus trichocarpa HOM05D005210 ORTHO05D010080 3.3e-49 199.1 215 58.6
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.1e-47 192.6 160 70.6
Ah.03g133380 Amaranthus hybridus HOM05D005210 ORTHO05D010080 2.2e-45 186.4 197 49.7
MELO3C028549.2 Cucumis melo HOM05D005210 ORTHO05D010080 2.9e-45 186.0 172 69.2
Gohir.A10G200000 Gossypium hirsutum HOM05D005210 ORTHO05D010080 2.4e-44 183.0 204 51.5
RcHm_v2.0_MTg0498311 Rosa chinensis HOM05D005210 ORTHO05D010080 3.2e-44 182.6 146 71.9
Gohir.A10G199900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 7.1e-44 181.4 202 50.5
Gohir.D10G207900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 7.1e-44 181.4 204 52.0
Gorai.011G233600 Gossypium raimondii HOM05D005210 ORTHO05D010080 7.1e-44 181.4 204 52.0
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 3.5e-43 179.1 150 72.0
SGA_v2.0_scaffold167G38415 Striga asiatica HOM05D005210 ORTHO05D010080 6.6e-42 174.9 203 50.2
MSTRG.20585 Avicennia marina HOM05D005210 ORTHO05D010080 1.5e-41 173.7 202 47.5
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 8.1e-40 167.9 159 66.0
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 8.1e-40 167.9 159 66.0
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.1e-39 167.5 133 74.4
Aqoxy4G00327 Aquilegia oxysepala HOM05D005210 ORTHO05D010080 1.8e-39 166.8 202 44.6
SGA_v2.0_scaffold119G32726 Striga asiatica HOM05D005210 ORTHO05D010080 2.4e-39 166.4 203 45.3
PGSC0003DMG400020779 Solanum tuberosum HOM05D005210 ORTHO05D010080 1.5e-38 163.7 274 43.1
SalBow8G1406 Salvia bowleyana HOM05D005210 ORTHO05D010080 4.4e-38 162.2 205 44.4
Migut.B01305 Erythranthe guttata HOM05D005210 ORTHO05D010080 1.4e-36 157.1 202 42.1
ECA236G2402 Erigeron canadensis HOM05D005210 ORTHO05D010080 5.4e-36 155.2 199 39.7
SEGI_01777 Sequoiadendron giganteum HOM05D005210 ORTHO05D010080 1.2e-35 154.1 219 40.2
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.7e-35 152.9 127 72.4
unitig_750.g28447 Utricularia gibba HOM05D005210 ORTHO05D010080 9.0e-31 137.9 199 41.2
QL04p020150 Quercus lobata HOM05D005210 ORTHO05D010080 2.0e-30 136.7 104 85.6
Peaxi162Scf01267g00005 Petunia axillaris HOM05D005210 ORTHO05D010080 4.5e-30 135.6 168 51.8
Oeu061104.1 Olea europaea HOM05D000700 ORTHO05D010080 2.2e-29 133.3 143 53.1
Sed0004476 Sechium edule HOM05D005210 ORTHO05D010080 3.8e-29 132.5 91 84.6
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 3.8e-29 132.5 122 61.5
Peaxi162Scf01462g00001 Petunia axillaris HOM05D005210 ORTHO05D010080 7.1e-28 128.3 97 79.4
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-27 127.1 96 77.1
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.3e-25 119.4 161 50.9
CDE02G1246 Ceratophyllum demersum HOM05D001325 ORTHO05D010080 6.2e-24 115.2 110 75.5
RcHm_v2.0_Chr2g0148221 Rosa chinensis HOM05D005210 ORTHO05D010080 2.4e-23 113.2 111 56.8
Nitab4.5_0003632g0030 Nicotiana tabacum HOM05D005210 ORTHO05D034847 5.8e-22 108.6 89 61.8
arahy.Tifrunner.gnm1.ann1.03NBHP Arachis hypogaea HOM05D005210 ORTHO05D010080 8.4e-21 104.8 89 74.2
RcHm_v2.0_Chr2g0148231 Rosa chinensis HOM05D005210 ORTHO05D010080 8.4e-21 104.8 70 74.3
CsaV3_5G017030 Cucumis sativus L. HOM05D005210 ORTHO05D010080 1.1e-20 104.4 85 76.5
arahy.Tifrunner.gnm1.ann1.ZXP4DA Arachis hypogaea HOM05D005210 ORTHO05D010080 2.1e-19 100.1 91 62.6
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 7.9e-19 98.2 71 85.9
Lalb_Chr17g0337341 Lupinus albus HOM05D005210 ORTHO05D010080 2.5e-17 93.2 62 74.2
Ciclev10017151m.g Citrus clementina HOM05D005210 ORTHO05D010080 4.8e-16 89.0 114 47.4
Nitab4.5_0001152g0440 Nicotiana tabacum HOM05D005210 ORTHO05D010080 1.4e-15 87.4 60 70.0
Hma1.2p1_0038F.1_g024120 Hydrangea macrophylla HOM05D005210 ORTHO05D010080 9.0e-15 84.7 59 69.5
Nitab4.5_0000345g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 1.2e-14 84.3 63 85.7
CsaV3_5G020380 Cucumis sativus L. HOM05D005210 ORTHO05D010080 1.5e-14 84.0 58 74.1
CAN.G505.4 Capsicum annuum HOM05D005210 ORTHO05D010080 2.9e-13 79.7 42 85.7
Lalb_Chr03g0038471 Lupinus albus HOM05D005210 ORTHO05D010080 1.1e-12 77.8 45 77.8
CAN.G1.22 Capsicum annuum HOM05D024148 ORTHO05D024823 1.4e-12 77.4 39 89.7
Migut.B01023 Erythranthe guttata HOM05D005210 ORTHO05D010080 2.7e-11 73.2 178 32.6
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-10 71.2 36 88.9
Nitab4.5_0000593g0150 Nicotiana tabacum HOM05D005210 ORTHO05D010080 1.3e-10 70.9 149 43.0
AagrBONN_evm.TU.Sc2ySwM_368.3250 Anthoceros agrestis HOM05D005210 ORTHO05D010080 1.0e-05 54.7 82 40.2


User provided reference genes

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