Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 3.9e-265 917.5 451 100.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.7e-231 805.8 452 89.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 2.0e-229 798.9 419 93.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.9e-228 795.0 460 86.5
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.8e-228 794.7 441 89.3
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 6.5e-228 793.9 455 87.9
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 3.2e-227 791.6 451 88.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.2e-226 789.6 445 89.2
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.0e-225 785.0 455 87.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 3.0e-225 785.0 455 87.5
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.1e-224 783.1 455 87.3
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 9.7e-224 780.0 444 88.3
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.1e-218 762.3 496 79.2
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.8e-217 759.2 539 73.3
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.3e-215 753.1 485 80.2
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.8e-215 751.9 600 67.2
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 6.8e-209 730.7 654 61.8
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.7e-207 724.9 541 71.0
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.5e-204 714.1 452 81.2
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 9.8e-200 700.3 576 66.7
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.1e-198 694.9 602 63.5
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.4e-192 675.2 456 77.0
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.7e-191 672.9 381 89.0
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.5e-189 665.2 362 90.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.4e-182 642.5 556 63.3
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.6e-181 638.3 486 70.2
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.5e-179 633.3 461 72.0
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.9e-175 618.2 468 70.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 4.1e-174 615.1 456 72.1
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.0e-172 610.5 460 69.8
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-167 592.8 441 72.6
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 4.5e-152 542.0 454 65.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.1e-150 537.3 613 52.2
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 9.0e-137 491.1 384 68.8
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.2e-136 490.7 256 96.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.9e-129 464.9 256 92.2
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 5.0e-127 458.8 256 91.0
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.5e-126 455.3 264 87.1
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 6.7e-124 448.4 500 53.2
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.3e-123 446.0 243 92.2
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 3.1e-121 439.5 260 87.7
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 3.1e-121 439.5 260 87.7
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 3.1e-121 439.5 260 87.7
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-119 434.1 260 86.5
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 5.0e-119 432.2 260 86.5
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 2.7e-117 426.4 236 91.5
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 3.0e-116 422.9 256 83.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 3.3e-115 419.5 247 87.9
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.7e-114 417.2 243 87.7
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.8e-114 416.4 243 89.3
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 3.7e-114 416.0 245 87.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 8.2e-114 414.8 216 90.7
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 8.2e-114 414.8 216 90.7
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.8e-113 413.7 240 83.8
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 9.1e-113 411.4 243 86.8
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-112 408.7 260 82.3
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 5.9e-112 408.7 260 82.3
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 7.7e-112 408.3 239 88.3
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.3e-111 407.5 256 82.4
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.3e-111 407.5 256 82.4
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.3e-111 407.5 256 82.4
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.3e-111 407.5 256 82.4
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.3e-111 407.5 256 82.4
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.3e-111 407.5 256 82.4
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.9e-111 406.4 256 84.4
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-110 404.1 577 46.4
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 6.1e-109 398.7 264 79.5
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.5e-107 394.0 244 84.4
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.5e-102 376.7 198 90.9
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.6e-101 374.0 239 82.4
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 3.0e-100 369.8 199 88.4
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-99 367.9 239 80.8
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.2e-99 367.9 239 80.8
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 3.3e-99 366.3 199 88.4
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 7.5e-99 365.2 189 92.1
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 7.5e-99 365.2 189 92.1
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 7.5e-99 365.2 189 92.1
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 7.5e-99 365.2 198 87.4
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 3.7e-98 362.8 198 86.4
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-98 362.1 189 91.0
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-98 362.1 189 91.0
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 6.3e-98 362.1 189 91.0
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 8.3e-98 361.7 198 88.4
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.8e-97 360.5 247 78.5
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-92 344.0 256 72.7
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 5.7e-91 339.0 179 96.1
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.4e-89 332.4 201 86.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-88 329.7 174 91.4
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 5.9e-88 328.9 188 89.4
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 1.0e-87 328.2 192 83.3
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 1.0e-87 328.2 192 83.3
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 8.6e-87 325.1 169 91.1
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.2e-85 321.2 199 80.4
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 3.6e-85 319.7 199 79.9
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 8.9e-84 315.1 192 85.4
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 6.6e-79 298.9 164 87.8
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 8.0e-77 292.0 148 91.9
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 8.0e-77 292.0 148 91.9
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.4e-75 286.6 231 69.3
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 4.4e-75 286.2 165 84.2
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 2.9e-74 283.5 247 66.8
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 3.0e-71 273.5 150 86.7
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 6.8e-68 262.3 154 89.0
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 6.8e-68 262.3 124 96.0
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.5e-67 261.2 202 72.8
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-67 260.8 188 70.2
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 2.7e-64 250.4 172 79.1
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 3.0e-63 246.9 139 87.8
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.1e-60 236.9 243 57.2
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.9e-57 227.6 146 78.1
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 8.6e-55 218.8 202 61.9
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 8.6e-55 218.8 202 61.9
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 4.7e-53 213.0 110 90.0
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.4e-51 206.8 109 84.4
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 4.9e-50 203.0 113 84.1
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 5.4e-49 199.5 114 88.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 7.8e-48 195.7 118 85.6
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.0e-47 193.7 181 56.9
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.9e-46 191.0 107 89.7
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.6e-46 189.5 106 90.6
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.6e-45 188.0 118 83.1
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 8.1e-45 185.7 176 58.5
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.6e-43 179.1 158 65.2
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-39 168.7 113 79.6
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-38 164.9 150 61.3
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-36 157.5 110 73.6
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.0e-36 156.8 96 83.3
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.3e-36 156.4 84 89.3
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.5e-35 154.8 93 84.9
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.6e-35 152.5 84 86.9
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.9e-34 149.8 79 89.9
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 5.4e-33 146.4 92 77.2
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-32 145.2 131 59.5
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 5.1e-31 139.8 189 45.0
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.3e-30 137.1 76 89.5
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 3.3e-30 137.1 76 89.5
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 3.3e-30 137.1 76 89.5
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 4.9e-26 123.2 131 55.0
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 1.9e-25 121.3 71 84.5
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-25 120.9 65 90.8
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.7e-24 117.5 59 96.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-21 107.8 109 54.1
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 4.0e-20 103.6 66 74.2
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-19 100.9 154 44.2
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.5e-19 100.1 59 81.4
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.5e-17 93.2 53 79.2
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 4.6e-16 90.1 78 60.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-15 87.8 53 79.2
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-14 85.1 51 74.5
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-14 84.0 67 67.2
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 4.3e-14 83.6 172 34.3
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 5.7e-14 83.2 48 79.2
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 7.4e-14 82.8 63 66.7
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 1.3e-13 82.0 46 82.6
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.4e-12 77.8 48 83.3
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 6.9e-12 76.3 68 57.4
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 9.0e-12 75.9 81 55.6
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 1.5e-11 75.1 36 97.2
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 2.0e-11 74.7 53 64.2
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 2.6e-11 74.3 62 67.7
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 5.9e-11 73.2 71 62.0
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 1.1e-09 68.9 167 34.1
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 4.2e-09 67.0 59 62.7
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.5e-09 66.6 40 80.0
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 5.5e-09 66.6 47 66.0
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.5e-09 66.6 47 66.0
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.4e-07 62.0 33 87.9


User provided reference genes

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