Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032298 Daucus carota HOM05D006384 ORTHO05D007917 3.0e-30 134.4 63 100.0
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 2.6e-10 68.2 45 73.3
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 8.5e-09 63.2 33 90.9
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 1.6e-07 58.9 39 74.4
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.6e-07 58.9 39 74.4
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 1.6e-07 58.9 39 74.4
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 2.1e-07 58.5 39 76.9
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 3.6e-07 57.8 33 81.8
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 3.6e-07 57.8 39 76.9
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 3.6e-07 57.8 39 76.9
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 4.6e-07 57.4 39 74.4
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 4.6e-07 57.4 39 74.4
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 4.6e-07 57.4 39 74.4
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 4.6e-07 57.4 39 71.8
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 4.6e-07 57.4 39 74.4
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 6.1e-07 57.0 41 65.9
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 6.1e-07 57.0 39 71.8
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 6.1e-07 57.0 39 69.2
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 7.9e-07 56.6 39 71.8
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 7.9e-07 56.6 39 71.8
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 7.9e-07 56.6 39 71.8
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 7.9e-07 56.6 39 71.8
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 7.9e-07 56.6 39 71.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.0e-06 56.2 39 74.4
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.0e-06 56.2 39 74.4
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 1.0e-06 56.2 39 74.4
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.0e-06 56.2 39 74.4
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.0e-06 56.2 39 71.8
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 1.0e-06 56.2 45 60.0
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.0e-06 56.2 39 71.8
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.4e-06 55.8 39 69.2
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.4e-06 55.8 39 71.8
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.4e-06 55.8 39 71.8
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.4e-06 55.8 39 71.8
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 1.8e-06 55.5 39 69.2
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 1.8e-06 55.5 39 69.2
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.8e-06 55.5 38 73.7
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.8e-06 55.5 39 71.8
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.8e-06 55.5 34 73.5
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.3e-06 55.1 39 66.7
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 3.0e-06 54.7 39 69.2
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 3.0e-06 54.7 39 71.8
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 3.0e-06 54.7 39 69.2
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 3.0e-06 54.7 39 69.2
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 3.0e-06 54.7 39 66.7
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 3.0e-06 54.7 39 69.2
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.9e-06 54.3 51 54.9
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 66.7
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 66.7
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 66.7
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 69.2
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 3.9e-06 54.3 39 71.8
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 5.1e-06 53.9 39 69.2
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 6.7e-06 53.5 39 69.2
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 6.7e-06 53.5 33 75.8
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 6.7e-06 53.5 39 69.2
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 6.7e-06 53.5 39 69.2
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 6.7e-06 53.5 39 64.1
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 8.8e-06 53.1 39 69.2
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 8.8e-06 53.1 39 64.1


User provided reference genes

Program Settings