Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032259 Daucus carota HOM05D003313 ORTHO05D004217 2.5e-161 572.0 282 100.0
DCAR_029311 Daucus carota HOM05D003313 ORTHO05D004217 5.3e-151 537.7 303 91.1
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 3.8e-133 478.4 274 86.5
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 3.8e-133 478.4 274 86.5
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 8.4e-133 477.2 274 86.9
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 1.9e-132 476.1 274 85.8
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 5.5e-132 474.6 274 86.1
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 4.6e-131 471.5 274 84.7
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 6.0e-131 471.1 274 85.4
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 1.0e-130 470.3 298 78.9
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 3.0e-130 468.8 274 83.9
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.1e-130 468.0 274 85.0
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.1e-130 468.0 274 85.0
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 6.7e-130 467.6 274 83.9
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 8.7e-130 467.2 274 84.3
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.1e-129 466.8 275 85.1
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.5e-129 466.5 274 85.0
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 2.5e-129 465.7 292 79.8
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 9.6e-129 463.8 274 83.6
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 1.6e-128 463.0 274 82.8
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 1.6e-128 463.0 274 83.2
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 2.1e-128 462.6 276 82.2
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 6.2e-128 461.1 274 83.6
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 6.2e-128 461.1 286 79.7
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 8.2e-128 460.7 274 83.2
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 8.2e-128 460.7 274 83.2
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.1e-127 460.3 274 82.8
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.8e-127 459.5 274 83.2
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 3.1e-127 458.8 274 81.8
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 3.1e-127 458.8 274 82.8
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 3.1e-127 458.8 274 82.8
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 3.1e-127 458.8 274 82.8
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 5.3e-127 458.0 274 83.2
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 6.9e-127 457.6 274 82.5
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 6.9e-127 457.6 274 82.1
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 9.0e-127 457.2 274 83.2
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 9.0e-127 457.2 274 81.0
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 9.0e-127 457.2 274 81.0
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.5e-126 456.4 274 81.4
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.5e-126 456.4 275 83.3
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 2.0e-126 456.1 274 81.0
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 2.0e-126 456.1 274 81.8
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 2.0e-126 456.1 279 80.3
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 2.0e-126 456.1 274 82.5
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.6e-126 455.7 274 82.8
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.6e-126 455.7 274 80.7
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 2.6e-126 455.7 275 82.9
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.5e-126 454.9 274 81.4
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 4.5e-126 454.9 274 81.4
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 4.5e-126 454.9 274 80.7
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 5.8e-126 454.5 274 82.1
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.0e-125 453.8 274 82.1
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.0e-125 453.8 274 81.4
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.7e-125 453.0 274 80.7
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 5.0e-125 451.4 275 81.1
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.1e-124 450.3 274 82.1
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 1.9e-124 449.5 274 81.4
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 2.5e-124 449.1 274 80.7
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.5e-124 449.1 274 80.3
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 9.3e-124 447.2 274 81.0
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 1.2e-123 446.8 274 82.1
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 1.6e-123 446.4 274 79.9
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 2.1e-123 446.0 274 80.3
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 2.1e-123 446.0 274 82.1
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 2.7e-123 445.7 274 81.0
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 2.7e-123 445.7 274 80.3
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.7e-123 445.7 274 80.3
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 2.7e-123 445.7 274 80.3
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 2.7e-123 445.7 274 80.3
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 2.7e-123 445.7 274 79.6
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 3.5e-123 445.3 274 82.1
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 7.9e-123 444.1 295 75.9
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 7.9e-123 444.1 274 81.8
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 7.9e-123 444.1 274 81.0
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 1.0e-122 443.7 274 79.6
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 1.0e-122 443.7 274 79.6
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 1.3e-122 443.4 274 79.6
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 1.3e-122 443.4 274 79.6
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 1.3e-122 443.4 274 79.6
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 1.3e-122 443.4 274 79.6
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 1.8e-122 443.0 274 81.4
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 3.0e-122 442.2 274 79.6
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 3.0e-122 442.2 274 79.6
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.0e-122 442.2 274 79.6
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 3.0e-122 442.2 274 81.4
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 3.9e-122 441.8 274 79.2
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 8.7e-122 440.7 274 79.9
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 1.1e-121 440.3 274 81.4
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.9e-121 439.5 274 79.6
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 4.3e-121 438.3 274 81.0
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.6e-120 436.4 274 78.5
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 6.3e-120 434.5 274 78.8
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 6.9e-119 431.0 274 77.4
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.2e-117 426.0 274 76.6
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 6.5e-117 424.5 287 73.5
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 2.5e-116 422.5 274 75.9
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 3.6e-115 418.7 274 73.7
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 7.9e-115 417.5 330 67.6
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 7.9e-115 417.5 342 65.5
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 5.7e-113 411.4 428 54.4
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 7.4e-113 411.0 331 67.4
CiPaw.01G000300 Carya illinoinensis HOM05D003313 ORTHO05D004217 1.3e-112 410.2 244 82.8
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 6.5e-109 397.9 274 70.4
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 9.1e-103 377.5 277 69.3
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 9.1e-103 377.5 277 69.3
CDE09G1422 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 3.6e-99 365.5 274 66.8
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 1.5e-97 360.1 290 65.5
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 2.2e-96 356.3 279 69.5
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.1e-92 344.0 279 65.2
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.2e-92 342.4 274 65.0
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 3.0e-90 335.9 274 59.1
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 1.2e-89 334.0 218 78.0
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.4e-89 332.4 275 60.7
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 1.2e-86 323.9 275 58.5
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.0e-86 323.2 280 61.1
Cpa.g.sc17.19 Carica papaya HOM05D003313 ORTHO05D004217 1.7e-85 320.1 173 87.3
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 4.4e-81 305.4 198 77.3
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 2.3e-74 283.1 277 53.1
vmacro01642 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 7.5e-73 278.1 239 61.9
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.7e-72 276.9 275 51.6
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.7e-72 276.9 311 52.4
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.5e-68 263.8 274 52.9
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 1.2e-65 254.2 276 53.6
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 7.3e-44 181.8 123 75.6
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 7.3e-44 181.8 123 75.6
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 4.9e-40 169.1 91 90.1
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.5e-38 162.9 91 86.8
MD10G1148900 Malus domestica HOM05D003313 ORTHO05D004217 7.8e-38 161.8 91 85.7
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 1.0e-37 161.4 108 74.1
SHI06534 Sapria himalayana HOM05D003313 ORTHO05D004217 5.1e-37 159.1 103 73.8
vmacro01643 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 9.6e-36 154.8 109 75.2
Nitab4.5_0004668g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.5e-33 147.5 118 63.6
MD10G1149000 Malus domestica HOM05D003313 ORTHO05D004217 3.2e-31 139.8 72 88.9
HanXRQChr14g0448821 Helianthus annuus HOM05D003313 ORTHO05D004217 1.2e-30 137.9 75 85.3
SHI06540 Sapria himalayana HOM05D003313 ORTHO05D004217 1.0e-29 134.8 78 80.8
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.1e-27 127.1 94 67.0
Glyma.18G148901 Glycine max HOM05D003313 ORTHO05D004217 8.1e-27 125.2 77 77.9
SMO353G0154 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 4.0e-26 122.9 138 49.3
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 1.1e-23 114.8 277 27.8
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 8.7e-21 105.1 299 28.4
QL09p014688 Quercus lobata HOM05D000257 ORTHO05D009129 2.0e-17 94.0 85 57.6
SHI06533 Sapria himalayana HOM05D003313 ORTHO05D004217 3.8e-16 89.7 58 74.1
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 7.6e-09 65.5 34 88.2
SMO334G0084 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 2.9e-08 63.5 102 39.2
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 8.4e-08 62.0 33 87.9
VMungo0720G1425 Vigna mungo HOM05D003313 ORTHO05D004217 2.5e-07 60.5 37 73.0
SHI06532 Sapria himalayana HOM05D003313 ORTHO05D004217 4.6e-06 56.2 33 78.8


User provided reference genes

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