Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.2e-103 379.8 189 100.0
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.6e-87 325.1 193 85.5
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.8e-84 315.5 194 80.9
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.7e-84 315.1 191 81.7
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.7e-84 315.1 191 82.2
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 5.4e-83 311.2 192 82.3
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 5.4e-83 311.2 194 78.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.4e-83 311.2 191 81.7
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 192 80.2
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 7.0e-83 310.8 191 80.6
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 7.0e-83 310.8 191 81.7
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.6e-82 309.7 191 80.1
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.6e-82 309.7 190 79.5
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 191 80.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 4.5e-82 308.1 191 79.1
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 5.9e-82 307.8 191 78.0
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.7e-82 307.4 191 80.1
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.7e-82 307.4 191 79.6
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 191 80.1
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.3e-81 306.6 191 78.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.7e-81 306.2 193 78.2
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.9e-81 305.4 194 80.4
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.9e-81 305.4 192 80.7
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.9e-81 305.4 191 77.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.8e-81 305.1 193 79.3
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.8e-81 305.1 194 79.9
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.8e-81 305.1 195 80.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 8.6e-81 303.9 191 78.5
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 8.6e-81 303.9 197 79.2
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-80 303.5 191 79.6
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.1e-80 303.5 191 78.0
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.5e-80 303.1 191 80.1
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.9e-80 302.8 197 77.7
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.3e-80 302.0 195 78.5
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 4.2e-80 301.6 191 77.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 4.2e-80 301.6 194 78.9
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 5.5e-80 301.2 192 78.1
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 7.2e-80 300.8 193 79.8
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 9.5e-80 300.4 193 77.7
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-79 300.1 192 78.6
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.2e-79 300.1 198 75.3
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.1e-79 299.3 193 77.2
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.8e-79 298.9 192 78.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 2.8e-79 298.9 193 78.8
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.7e-79 298.1 193 78.2
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 4.7e-79 298.1 191 77.5
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 6.1e-79 297.7 194 78.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.0e-78 297.0 198 74.7
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.4e-78 296.6 193 76.2
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.8e-78 296.2 195 76.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.3e-78 295.8 200 75.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 3.0e-78 295.4 193 77.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.0e-78 295.4 204 71.6
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 4.0e-78 295.0 194 76.3
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.8e-78 294.3 207 72.5
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.5e-77 293.1 191 76.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.5e-77 293.1 199 74.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-77 293.1 195 76.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-77 293.1 195 76.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-77 292.7 194 76.8
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.0e-77 292.7 200 74.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.0e-77 292.7 200 74.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.0e-77 292.7 195 75.9
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.0e-77 292.7 199 74.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.4e-77 292.0 195 76.4
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 3.4e-77 292.0 198 75.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.4e-77 292.0 203 73.4
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.4e-77 291.6 196 75.0
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.8e-77 290.4 201 73.1
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 197 73.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 199 72.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.3e-76 290.0 201 73.1
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.7e-76 289.7 197 72.1
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.7e-76 289.7 198 75.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.8e-76 288.9 198 72.7
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.8e-76 288.9 192 75.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 3.7e-76 288.5 194 74.7
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.9e-76 288.1 196 74.5
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.3e-76 287.7 201 71.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.4e-75 286.6 199 72.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.8e-75 286.2 197 72.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-75 286.2 197 72.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.4e-75 285.8 199 71.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-75 285.8 203 73.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.1e-75 285.4 199 71.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 5.4e-75 284.6 198 71.2
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.4e-75 284.6 200 71.0
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.4e-75 284.6 201 72.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 5.4e-75 284.6 199 71.4
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.4e-75 284.6 214 68.2
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 5.4e-75 284.6 240 65.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 7.0e-75 284.3 199 70.4
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.0e-75 284.3 207 72.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.0e-75 284.3 196 74.0
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 9.2e-75 283.9 196 71.9
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.6e-74 283.1 199 70.4
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.6e-74 283.1 199 70.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.6e-74 283.1 199 70.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.6e-74 283.1 201 70.1
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.6e-74 283.1 202 70.3
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.0e-74 282.7 198 71.7
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.7e-74 282.3 194 70.6
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.5e-74 282.0 192 71.4
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-74 281.2 196 70.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.3e-73 279.3 199 69.8
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.9e-73 278.9 190 71.1
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.8e-73 278.5 172 80.8
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 8.6e-73 277.3 199 71.4
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.9e-72 276.2 189 72.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.3e-72 275.4 198 70.7
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 3.3e-72 275.4 200 70.5
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.3e-72 275.4 194 71.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.3e-72 275.4 211 68.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 9.5e-72 273.9 194 70.6
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.1e-71 272.7 198 70.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.8e-71 272.3 199 69.8
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 3.6e-71 271.9 195 68.2
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 8.0e-71 270.8 174 78.2
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 8.0e-71 270.8 192 70.8
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 4.0e-70 268.5 202 68.8
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.2e-69 266.9 198 70.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.4e-69 265.4 186 72.0
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 7.5e-69 264.2 194 66.5
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.3e-68 263.5 182 73.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.2e-68 262.7 214 66.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.9e-68 262.3 176 76.7
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 6.4e-68 261.2 186 71.0
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.1e-67 260.4 223 61.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.4e-67 259.2 189 65.6
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.2e-66 256.9 178 69.7
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.0e-65 253.8 192 67.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.0e-65 251.5 180 70.0
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 6.6e-65 251.1 186 68.8
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.6e-65 251.1 201 65.2
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.5e-64 249.2 204 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.3e-64 248.8 178 67.4
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.4e-62 243.4 233 58.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-61 240.4 213 61.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 7.5e-61 237.7 187 63.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 8.3e-60 234.2 182 67.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.3e-57 226.9 189 63.0
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 3.0e-57 225.7 201 62.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-55 220.3 177 65.0
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 7.8e-50 201.1 153 69.3
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 4.7e-47 191.8 120 82.5
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 6.8e-46 188.0 115 79.1
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 3.0e-41 172.6 100 88.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 9.6e-40 167.5 174 51.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.2e-39 167.2 97 85.6
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.8e-39 166.0 105 82.9
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.5e-34 149.1 97 73.2
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.1e-33 145.2 188 48.4
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.7e-28 130.2 97 71.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.7e-28 130.2 70 90.0
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.1e-27 127.5 197 45.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-26 123.6 69 75.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 6.0e-26 121.7 181 40.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.3e-25 120.6 99 62.6
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.7e-25 118.2 78 69.2
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 3.3e-24 115.9 192 39.6
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-21 105.9 100 63.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 7.1e-19 98.2 190 40.5
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 8.7e-17 91.3 190 39.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 7.4e-16 88.2 169 35.5
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.1e-14 84.3 56 66.1
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 5.3e-14 82.0 71 62.0
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 9.0e-14 81.3 67 55.2
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.8e-13 78.6 51 74.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.0e-12 77.8 53 71.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.8e-12 75.9 64 57.8
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-07 60.5 59 54.2
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.2e-07 60.1 72 47.2


User provided reference genes

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