Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 5.1e-99 364.4 181 100.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.8e-35 151.4 208 45.7
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.3e-33 147.1 215 42.8
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.4e-32 142.9 218 43.1
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.4e-32 142.9 218 43.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 5.4e-32 141.7 209 39.2
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.4e-32 141.7 194 45.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.6e-31 140.2 234 40.6
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.6e-31 140.2 224 41.1
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.6e-31 140.2 211 43.1
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 4.6e-31 138.7 223 41.7
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-30 137.5 236 39.4
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-30 137.1 218 41.3
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.3e-30 137.1 224 38.8
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.3e-30 136.3 225 39.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.0e-30 136.0 214 40.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.9e-30 135.6 218 41.7
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.9e-30 135.6 229 38.4
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.9e-30 135.6 229 38.4
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 5.0e-30 135.2 222 39.2
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.1e-29 134.0 224 40.2
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.1e-29 134.0 230 38.7
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.3e-29 132.5 218 38.5
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.2e-28 130.6 193 39.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.6e-28 130.2 194 42.3
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.6e-28 130.2 231 39.0
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 2.8e-28 129.4 226 38.9
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.2e-28 128.3 240 39.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 8.0e-28 127.9 242 35.5
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.1e-27 127.5 201 40.8
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.1e-27 127.5 239 36.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.1e-27 127.5 220 39.1
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-27 127.5 220 39.1
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.1e-27 127.5 244 34.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-27 127.1 218 37.2
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.8e-27 126.7 190 41.1
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.8e-27 126.7 218 37.2
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.3e-27 126.3 218 41.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.3e-27 126.3 214 37.4
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.3e-27 126.3 214 37.4
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.3e-27 126.3 233 37.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.3e-27 126.3 245 35.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.1e-27 125.9 227 40.1
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.2e-27 125.2 218 37.2
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 6.8e-27 124.8 212 39.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.8e-27 124.8 219 36.5
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 6.8e-27 124.8 204 41.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.8e-27 124.8 223 37.2
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 6.8e-27 124.8 224 38.8
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 6.8e-27 124.8 216 36.6
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 8.9e-27 124.4 212 38.2
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.9e-27 124.4 245 34.3
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.2e-26 124.0 235 34.9
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 7.5e-26 121.3 216 35.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.3e-25 120.6 207 40.6
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.7e-25 120.2 226 38.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.7e-25 120.2 214 36.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.9e-25 119.4 228 36.4
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.9e-25 119.4 226 40.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.7e-25 119.0 227 38.3
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-25 119.0 199 39.7
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 4.9e-25 118.6 215 34.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 8.3e-25 117.9 230 34.3
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.1e-24 117.5 230 38.3
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.4e-24 117.1 215 37.7
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.4e-24 117.1 218 35.3
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.4e-24 117.1 220 35.5
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.9e-24 116.7 229 36.2
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.4e-24 116.3 215 35.3
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.2e-24 115.9 216 37.5
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 4.1e-24 115.5 212 36.8
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 5.4e-24 115.2 207 36.7
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 5.4e-24 115.2 211 37.0
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.4e-24 115.2 242 34.3
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.6e-23 113.6 220 34.1
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.1e-23 113.2 224 38.4
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.1e-23 113.2 194 38.7
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.7e-23 112.8 219 35.2
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 6.0e-23 111.7 194 39.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-22 110.9 211 33.6
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.0e-22 110.9 214 34.6
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.0e-22 109.4 219 32.9
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.9e-22 109.0 210 34.8
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.1e-22 108.6 219 32.9
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.1e-21 107.5 198 36.9
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.9e-21 106.7 207 37.2
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-21 106.3 214 33.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 3.3e-21 105.9 212 34.0
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.2e-20 104.0 216 34.3
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.4e-19 100.5 210 35.2
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.4e-19 100.5 213 35.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.8e-19 100.1 198 36.9
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.3e-19 99.8 160 38.1
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 3.1e-19 99.4 208 34.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 3.1e-19 99.4 208 34.1
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.0e-19 99.0 226 33.2
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 6.8e-19 98.2 193 36.3
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 8.9e-19 97.8 208 34.1
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-18 97.4 244 31.6
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.6e-18 96.3 204 33.8
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.6e-18 96.3 204 33.8
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 7.5e-18 94.7 186 36.6
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 9.9e-18 94.4 247 30.0
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-17 94.0 208 33.7
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-17 94.0 190 36.3
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.7e-17 93.6 219 33.8
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.2e-17 93.2 179 36.9
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.7e-17 92.4 196 37.8
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.7e-17 92.4 182 36.8
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.3e-17 91.3 194 33.5
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.4e-16 90.5 216 31.9
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-16 90.1 187 35.8
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 2.4e-16 89.7 189 34.9
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 2.4e-16 89.7 189 34.9
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.4e-16 89.7 183 35.5
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.4e-16 89.7 221 34.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 4.1e-16 89.0 203 33.0
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 4.1e-16 89.0 203 33.0
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 4.1e-16 89.0 186 36.0
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 4.1e-16 89.0 203 33.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.1e-16 89.0 174 35.6
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.6e-15 87.0 217 31.3
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.6e-15 87.0 185 32.4
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.1e-15 86.7 172 35.5
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.1e-15 86.7 223 32.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.1e-15 86.7 214 33.2
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.5e-15 85.9 192 34.9
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.6e-15 85.5 145 40.0
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 6.0e-15 85.1 110 44.5
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.0e-14 82.8 218 31.7
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.6e-14 81.6 191 33.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 8.6e-14 81.3 135 40.7
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.5e-13 80.5 119 37.8
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.5e-13 79.7 217 31.8
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.3e-13 79.3 218 30.7
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 9.6e-13 77.8 194 34.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.2e-12 77.4 238 31.1
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-12 77.4 119 37.0
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.8e-11 73.6 124 37.1
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 8.9e-11 71.2 106 40.6
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.5e-10 70.5 182 31.3
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.6e-10 69.7 145 32.4
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.6e-10 69.7 106 39.6
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 3.2e-08 62.8 206 29.6
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.2e-08 62.4 108 38.9
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 3.5e-07 59.3 112 36.6
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 4.6e-07 58.9 185 27.0
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 8.7e-06 54.7 180 26.1


User provided reference genes

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