Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 6.5e-57 223.8 109 100.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-38 163.3 109 74.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.2e-33 145.6 110 67.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.0e-33 144.4 106 62.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 8.5e-33 143.7 109 64.2
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.5e-32 142.1 106 66.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 7.2e-32 140.6 105 62.9
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.2e-31 139.8 107 66.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.1e-31 139.0 110 63.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.7e-31 138.7 107 63.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.6e-31 138.3 106 61.3
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 6.1e-31 137.5 106 60.4
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.0e-30 136.7 107 63.6
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.0e-30 136.7 107 63.6
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.0e-30 136.7 107 63.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.8e-30 134.0 107 62.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.4e-29 131.3 106 61.3
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.8e-29 130.2 108 64.8
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.8e-29 130.2 108 64.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.7e-28 129.4 94 68.1
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.8e-28 128.6 106 64.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.3e-28 127.5 111 58.6
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.1e-27 126.7 120 59.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-27 125.9 111 61.3
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.8e-27 125.9 108 59.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.1e-27 125.2 110 57.3
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 4.1e-27 124.8 107 58.9
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 5.4e-27 124.4 110 58.2
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 5.4e-27 124.4 105 58.1
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 7.0e-27 124.0 106 56.6
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 9.1e-27 123.6 106 56.6
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.2e-26 123.2 107 57.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.2e-26 123.2 106 53.8
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.6e-26 122.9 106 53.8
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.0e-26 122.5 106 55.7
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.0e-26 122.5 112 64.3
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.0e-26 122.5 106 56.6
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 7.7e-26 120.6 109 55.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 7.7e-26 120.6 109 55.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 7.7e-26 120.6 98 63.3
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 7.7e-26 120.6 106 55.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 7.7e-26 120.6 103 54.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-25 119.8 106 55.7
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.3e-25 119.0 107 57.9
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.3e-25 119.0 106 58.5
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.3e-25 119.0 107 57.9
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.9e-25 118.6 106 57.5
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.8e-25 118.2 115 56.5
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.0e-25 117.9 107 55.1
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.0e-25 117.9 107 55.1
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.5e-25 117.5 112 57.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 8.6e-25 117.1 93 61.3
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.1e-24 116.7 92 60.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.9e-24 115.9 107 54.2
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.5e-24 115.5 97 54.6
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.3e-24 115.2 106 50.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 4.2e-24 114.8 110 55.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 5.5e-24 114.4 107 52.3
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.5e-24 114.4 109 56.9
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 7.2e-24 114.0 103 54.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 7.2e-24 114.0 101 54.5
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.2e-23 113.2 111 53.2
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.1e-23 112.5 105 54.3
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 4.7e-23 111.3 106 54.7
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 6.1e-23 110.9 103 53.4
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 8.0e-23 110.5 110 57.3
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.4e-22 109.8 110 58.2
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.4e-22 109.8 110 58.2
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.4e-22 109.8 109 51.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-22 109.4 110 55.5
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.0e-22 108.6 107 53.3
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.0e-22 108.2 112 53.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 6.8e-22 107.5 95 54.7
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 8.9e-22 107.1 87 63.2
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.9e-22 107.1 112 52.7
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.0e-21 105.9 108 49.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.0e-21 105.9 94 54.3
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 2.6e-21 105.5 107 49.5
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 3.4e-21 105.1 95 54.7
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 5.7e-21 104.4 123 51.2
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 7.5e-21 104.0 98 55.1
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.5e-21 104.0 108 51.9
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 2.2e-20 102.4 111 49.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.2e-20 102.4 123 50.4
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.7e-20 101.7 109 50.5
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 6.3e-20 100.9 102 56.9
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 6.3e-20 100.9 104 50.0
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.1e-19 98.6 109 47.7
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.4e-19 97.8 104 46.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 5.4e-19 97.8 99 57.6
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.2e-18 96.7 81 53.1
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.5e-18 95.1 98 56.1
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.5e-18 94.7 115 47.8
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 7.8e-18 94.0 109 45.9
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 7.8e-18 94.0 109 45.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 7.8e-18 94.0 109 45.9
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.8e-18 94.0 109 45.9
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.7e-17 92.8 102 52.9
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.7e-17 92.8 102 46.1
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.3e-17 92.4 109 45.0
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.3e-17 92.4 110 47.3
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.9e-17 92.0 110 47.3
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.8e-17 91.7 109 46.8
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.0e-17 91.3 113 44.2
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 6.6e-17 90.9 109 44.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 6.6e-17 90.9 115 47.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-16 90.1 109 46.8
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-16 90.1 109 46.8
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.1e-16 90.1 109 46.8
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.5e-16 89.7 111 44.1
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.9e-16 89.4 109 46.8
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.9e-16 89.4 95 47.4
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.5e-16 89.0 98 44.9
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 3.3e-16 88.6 109 45.9
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 3.3e-16 88.6 109 45.9
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.3e-16 88.2 112 42.9
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 5.6e-16 87.8 94 51.1
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.6e-16 87.8 107 47.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 7.3e-16 87.4 113 43.4
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 9.5e-16 87.0 115 47.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.2e-15 86.7 100 46.0
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.2e-15 86.7 90 51.1
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.6e-15 86.3 100 46.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.6e-15 85.1 112 43.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.6e-15 85.1 110 45.5
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.4e-14 83.2 102 42.2
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.8e-14 82.8 109 43.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.0e-14 82.0 110 42.7
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.2e-13 80.1 104 47.1
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.5e-13 79.7 97 42.3
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.0e-13 79.3 102 49.0
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 3.4e-13 78.6 100 46.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.8e-13 77.8 109 42.2
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 107 42.1
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.1e-11 73.6 55 63.6
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.4e-11 73.2 53 54.7
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.9e-11 72.8 106 44.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.6e-10 69.7 110 41.8
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.5e-10 68.6 106 42.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 4.6e-10 68.2 95 44.2
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 6.0e-10 67.8 106 40.6
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.7e-09 66.2 101 39.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 5.0e-09 64.7 108 42.6
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.8e-06 56.2 95 36.8


User provided reference genes

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