Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032162 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-54 216.9 213 100.0
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 7.5e-49 198.0 212 96.7
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 7.5e-49 198.0 212 96.7
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 7.5e-49 198.0 212 96.7
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 3.7e-32 142.5 234 71.4
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 3.5e-22 109.4 93 66.7
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 3.9e-21 105.9 93 66.7
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 6.6e-21 105.1 92 65.2
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.1e-20 104.4 85 70.6
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.1e-20 104.4 85 70.6
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.5e-20 104.0 83 69.9
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.5e-20 104.0 81 71.6
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.5e-20 104.0 92 66.3
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.5e-20 104.0 92 66.3
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 1.5e-20 104.0 93 65.6
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 4.3e-20 102.4 92 66.3
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 5.6e-20 102.1 89 64.0
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 7.3e-20 101.7 94 64.9
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.3e-20 101.7 92 65.2
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.3e-20 101.7 92 65.2
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 9.5e-20 101.3 76 72.4
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 2.1e-19 100.1 100 59.0
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.6e-19 99.4 92 64.1
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 8.0e-19 98.2 90 64.4
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 1.8e-18 97.1 92 63.0
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 2.3e-18 96.7 94 61.7
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 2.3e-18 96.7 91 63.7
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.1e-18 96.3 91 62.6
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.2e-18 95.5 85 64.7
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 5.2e-18 95.5 94 59.6
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 1.2e-17 94.4 101 56.4
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 2.0e-17 93.6 101 55.4
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 7.5e-17 91.7 94 57.4
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 7.5e-17 91.7 92 59.8
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.3e-16 90.9 80 65.0
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 1.7e-16 90.5 93 59.1
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.7e-16 90.5 93 54.8
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.7e-16 90.5 93 54.8
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 3.7e-16 89.4 93 58.1
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.7e-16 89.4 93 58.1
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.7e-16 89.4 93 58.1
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.7e-16 89.4 93 58.1
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 4.9e-16 89.0 94 58.5
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 6.4e-16 88.6 93 57.0
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 1.4e-15 87.4 94 57.4
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 1.4e-15 87.4 93 57.0
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 1.9e-15 87.0 96 59.4
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 2.4e-15 86.7 87 60.9
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 2.4e-15 86.7 75 66.7
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 2.4e-15 86.7 95 54.7
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 7.0e-15 85.1 83 63.9
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 7.0e-15 85.1 96 58.3
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 7.0e-15 85.1 87 60.9
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 9.2e-15 84.7 95 54.7
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.2e-14 84.3 90 56.7
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 1.6e-14 84.0 86 60.5
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 2.0e-14 83.6 90 56.7
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 2.0e-14 83.6 87 59.8
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 4.6e-14 82.4 95 49.5
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 4.6e-14 82.4 55 78.2
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 6.0e-14 82.0 94 52.1
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 1.0e-13 81.3 74 62.2
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.3e-13 80.9 93 51.6
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 1.3e-13 80.9 74 63.5
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.3e-13 80.9 79 59.5
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 1.7e-13 80.5 93 50.5
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 2.3e-13 80.1 87 58.6
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 2.3e-13 80.1 92 53.3
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 3.0e-13 79.7 81 59.3
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 3.9e-13 79.3 96 54.2
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 3.9e-13 79.3 94 56.4
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 5.0e-13 79.0 74 56.8
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 6.6e-13 78.6 89 56.2
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 6.6e-13 78.6 89 56.2
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 8.6e-13 78.2 93 49.5
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 8.6e-13 78.2 94 56.4
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 1.1e-12 77.8 93 51.6
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 1.5e-12 77.4 94 55.3
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.9e-12 77.0 84 52.4
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 3.3e-12 76.3 76 57.9
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 3.3e-12 76.3 78 56.4
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 3.3e-12 76.3 79 54.4
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 4.3e-12 75.9 88 50.0
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.3e-12 75.9 84 53.6
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 4.3e-12 75.9 84 53.6
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 4.3e-12 75.9 93 49.5
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 7.3e-12 75.1 86 50.0
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.2e-11 74.3 93 49.5
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.2e-11 74.3 83 53.0
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.6e-11 73.9 98 52.0
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.8e-11 73.2 74 55.4
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 2.8e-11 73.2 93 50.5
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 3.6e-11 72.8 91 51.6
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 3.6e-11 72.8 98 52.0
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.7e-11 72.4 96 52.1
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 6.2e-11 72.0 88 47.7
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 6.2e-11 72.0 60 61.7
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 6.2e-11 72.0 60 61.7
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 8.1e-11 71.6 99 46.5
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 1.1e-10 71.2 71 54.9
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.4e-10 70.9 86 47.7
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 1.8e-10 70.5 84 53.6
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.8e-10 70.5 96 51.0
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 2.3e-10 70.1 51 66.7
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 3.1e-10 69.7 89 51.7
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 4.0e-10 69.3 64 60.9
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 4.0e-10 69.3 76 53.9
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 4.0e-10 69.3 97 47.4
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 5.2e-10 68.9 79 51.9
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 5.2e-10 68.9 82 53.7
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 6.8e-10 68.6 74 54.1
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 6.8e-10 68.6 55 63.6
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 6.8e-10 68.6 55 63.6
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 8.9e-10 68.2 55 65.5
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 8.9e-10 68.2 55 65.5
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 8.9e-10 68.2 55 65.5
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 8.9e-10 68.2 93 49.5
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 1.5e-09 67.4 73 52.1
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 2.0e-09 67.0 74 54.1
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.2e-08 63.5 93 45.2
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 2.2e-08 63.5 93 45.2
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 7.1e-07 58.5 75 46.7
ATR0620G024 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.6e-06 57.4 66 54.5
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.6e-06 57.4 66 54.5


User provided reference genes

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