Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 3.4e-124 448.4 227 100.0
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 3.4e-124 448.4 227 100.0
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.3e-111 404.8 207 99.5
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 6.4e-107 391.0 227 89.9
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 6.4e-107 391.0 227 89.9
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.3e-104 383.3 223 89.7
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 1.7e-104 382.9 227 88.5
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.9e-103 379.4 227 88.1
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.4e-100 368.6 207 91.3
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 1.1e-93 347.1 243 78.2
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 7.8e-89 330.9 206 85.0
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 6.6e-88 327.8 224 80.8
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 5.3e-85 318.2 171 93.6
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.4e-83 310.8 166 95.2
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 5.3e-77 291.6 178 86.5
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 3.4e-76 288.9 221 73.3
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 2.2e-75 286.2 152 94.1
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 6.5e-75 284.6 178 84.3
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 8.4e-75 284.3 144 98.6
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.4e-74 283.5 144 98.6
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 2.5e-74 282.7 153 94.8
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 9.3e-74 280.8 143 98.6
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 9.3e-74 280.8 143 98.6
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 6.0e-73 278.1 144 96.5
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 2.5e-71 272.7 193 77.2
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 7.4e-71 271.2 202 74.8
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.9e-69 264.6 143 94.4
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.7e-67 260.0 147 91.8
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 1.8e-61 240.0 230 63.0
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 9.0e-61 237.7 223 64.1
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 7.7e-60 234.6 147 83.0
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.8e-56 223.4 145 81.4
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-54 217.2 148 78.4
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 8.5e-51 204.5 200 62.0
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.7e-49 199.5 150 75.3
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 3.6e-49 199.1 113 91.2
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 1.3e-46 190.7 95 100.0
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 2.2e-46 189.9 95 98.9
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 2.2e-46 189.9 95 98.9
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.4e-45 187.2 94 98.9
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 5.3e-45 185.3 95 94.7
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.5e-44 183.7 170 62.9
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 2.6e-44 183.0 94 96.8
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 3.5e-44 182.6 102 91.2
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.7e-43 180.3 103 89.3
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 2.2e-43 179.9 97 93.8
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 2.2e-43 179.9 97 93.8
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 2.2e-43 179.9 97 93.8
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 2.2e-43 179.9 97 93.8
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 2.2e-43 179.9 97 93.8
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 2.2e-43 179.9 97 93.8
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.9e-42 176.8 114 83.3
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.2e-41 174.1 115 80.9
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 8.0e-41 171.4 82 100.0
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 2.2e-38 163.3 83 98.8
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.2e-38 161.4 101 81.2
arahy.Tifrunner.gnm1.ann1.J9XL5M Arachis hypogaea HOM05D000963 ORTHO05D005131 7.0e-37 158.3 83 96.4
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 9.1e-37 157.9 95 83.2
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 1.2e-36 157.5 138 65.9
HPP92_028387 Vanilla planifolia HOM05D000963 ORTHO05D005131 1.0e-35 154.5 85 91.8
MBI08_g48228_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.7e-35 153.7 78 98.7
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.7e-35 153.7 95 85.3
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 6.5e-35 151.8 86 90.7
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.2e-34 149.1 95 80.0
arahy.Tifrunner.gnm1.ann1.LWFR1C Arachis hypogaea HOM05D000963 ORTHO05D005131 5.5e-34 148.7 78 96.2
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 9.4e-34 147.9 73 100.0
SHI36890 Sapria himalayana HOM05D000963 ORTHO05D005131 4.7e-33 145.6 74 97.3
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.7e-33 145.6 81 90.1
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 1.8e-32 143.7 122 65.6
Hma1.2p1_0045F.1_g026530 Hydrangea macrophylla HOM05D000963 ORTHO05D005131 2.6e-31 139.8 84 84.5
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 5.7e-31 138.7 122 63.1
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 9.8e-31 137.9 73 93.2
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 1.7e-30 137.1 141 61.7
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 3.7e-30 136.0 73 93.2
Lsat_1_v5_gn_9_35301 Lactuca sativa HOM05D000963 ORTHO05D005131 4.8e-30 135.6 115 62.6
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.8e-29 133.7 135 60.0
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.8e-29 133.7 67 95.5
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 7.0e-29 131.7 83 81.9
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.0e-28 130.2 73 90.4
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 3.5e-28 129.4 67 95.5
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.3e-27 127.5 91 76.9
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.2e-25 120.9 79 79.7
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-25 120.6 125 60.8
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 2.1e-25 120.2 58 100.0
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 6.1e-25 118.6 95 71.6
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.8e-24 114.8 68 82.4
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 3.4e-23 112.8 78 74.4
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 5.7e-23 112.1 87 69.0
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 5.7e-23 112.1 148 50.0
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-22 110.2 79 73.4
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-22 110.2 74 71.6
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.8e-22 109.8 79 73.4
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.8e-22 109.8 74 71.6
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 1.1e-21 107.8 56 91.1
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 7.0e-21 105.1 56 91.1
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 9.1e-21 104.8 51 94.1
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 9.1e-21 104.8 54 92.6
Migut.D01497 Erythranthe guttata HOM05D000963 ORTHO05D005131 4.3e-18 95.9 125 52.8
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 2.1e-17 93.6 138 48.6
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 2.8e-17 93.2 83 67.5
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 6.1e-17 92.0 68 69.1
arahy.Tifrunner.gnm1.ann1.JE53Y0 Arachis hypogaea HOM05D000963 ORTHO05D005131 8.0e-17 91.7 48 93.8
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-16 90.9 52 86.5
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.3e-16 90.1 83 60.2
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 8.9e-16 88.2 117 51.3
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.5e-15 87.4 48 85.4
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.0e-15 87.0 57 71.9
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 5.7e-15 85.5 44 93.2
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 5.7e-15 85.5 44 93.2
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 7.5e-15 85.1 54 75.9
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-14 84.3 83 56.6
Medtr7g093213 Medicago truncatula HOM05D000963 ORTHO05D005131 1.7e-14 84.0 41 97.6
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 1.7e-14 84.0 252 36.1
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 3.7e-14 82.8 148 43.9
arahy.Tifrunner.gnm1.ann1.D10MHU Arachis hypogaea HOM05D000963 ORTHO05D005131 5.4e-13 79.0 44 90.9
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 7.0e-13 78.6 44 86.4
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 3.5e-12 76.3 37 97.3
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.5e-12 76.3 41 90.2
ECA234G4679 Erigeron canadensis HOM05D000476 ORTHO05D004793 7.8e-12 75.1 37 94.6
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 7.8e-12 75.1 124 41.9
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 7.8e-12 75.1 92 48.9
Sopen10g016560 Solanum pennellii HOM05D000963 ORTHO05D005131 1.7e-11 73.9 38 89.5
arahy.Tifrunner.gnm1.ann1.SH46T5 Arachis hypogaea HOM05D000963 ORTHO05D005131 2.3e-11 73.6 41 90.2
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 2.3e-11 73.6 38 94.7
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 3.3e-10 69.7 48 72.9
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 3.3e-10 69.7 48 72.9
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 5.6e-10 68.9 122 41.0
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 7.3e-10 68.6 58 65.5
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 9.5e-10 68.2 44 75.0
TPR.G33662 Trifolium pratense HOM05D004957 ORTHO05D006741 1.2e-09 67.8 35 88.6
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 2.1e-09 67.0 33 100.0
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 2.1e-09 67.0 48 70.8
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 2.1e-09 67.0 48 70.8
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 2.1e-09 67.0 48 70.8
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 2.1e-09 67.0 48 70.8
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 3.6e-09 66.2 49 75.5
Cfa010543 Carpinus fangiana HOM05D000963 ORTHO05D005131 6.2e-09 65.5 36 88.9
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 8.0e-09 65.1 52 65.4
BraA07t28395Z Brassica rapa HOM05D000963 ORTHO05D005131 5.2e-08 62.4 41 75.6
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 5.2e-08 62.4 40 70.0
Nitab4.5_0008813g0020 Nicotiana tabacum HOM05D033885 ORTHO05D005131 5.2e-08 62.4 50 68.0
Sopen09g020260 Solanum pennellii HOM05D010604 ORTHO05D012476 5.2e-08 62.4 49 63.3
Nitab4.5_0004533g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 8.9e-08 61.6 40 77.5
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.5e-07 60.8 42 66.7
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 2.6e-07 60.1 44 75.0
Oeu043433.1 Olea europaea HOM05D000963 ORTHO05D005131 7.5e-07 58.5 50 60.0
SEGI_14910 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.7e-06 57.4 82 45.1
SGA_v2.0_scaffold43G16403 Striga asiatica HOM05D000457 ORTHO05D000560 4.9e-06 55.8 32 84.4


User provided reference genes

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