Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 2009.2 1089 100.0
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1825.1 1248 82.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1521.9 1090 74.1
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1501.9 1096 75.1
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1493.0 1087 72.3
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1491.9 1082 73.8
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1488.0 978 78.0
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1482.6 1082 72.6
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1482.6 1086 72.1
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1480.7 1088 72.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1476.8 1087 73.9
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1475.3 1089 73.0
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1469.9 1106 70.7
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1456.8 1085 72.4
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1453.3 1084 71.0
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1446.8 1085 70.0
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1446.8 1085 72.3
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1446.8 1085 72.3
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1445.3 1112 71.8
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1437.9 1084 69.9
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1437.6 1113 68.1
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1436.4 1091 70.6
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1434.5 1087 69.8
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1431.4 1082 70.3
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1429.8 1081 70.5
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1429.5 1066 70.5
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 1095 70.0
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 1083 71.1
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 1098 69.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1424.5 1086 70.3
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1424.1 1086 68.8
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1422.5 1087 69.5
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1421.4 1105 68.9
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 1083 70.5
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1413.3 1073 70.5
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1410.6 1088 69.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1409.4 1085 68.7
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1408.3 1088 68.7
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1402.5 1139 66.3
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1398.3 1070 69.1
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1391.3 1085 67.9
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1390.2 1085 68.0
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1385.5 1088 71.0
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1384.0 1088 67.9
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1379.4 1088 69.0
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1377.1 1084 68.4
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1375.9 1084 68.5
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1375.9 1084 67.5
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1375.1 1082 67.3
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1372.8 1060 70.4
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1371.7 1088 67.6
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1371.7 1094 68.4
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1369.0 1125 65.5
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1364.4 882 76.6
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1364.4 882 76.6
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1364.0 1050 68.6
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1363.2 882 76.5
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1362.4 1056 69.6
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1361.3 1085 66.8
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1359.7 1095 67.5
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1357.8 1088 66.8
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1357.8 881 76.3
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1353.6 1011 70.5
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1353.2 1082 66.8
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1353.2 1090 67.8
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1351.3 1080 69.4
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1350.9 1116 65.9
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1350.1 1109 66.8
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1349.3 1095 67.4
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1341.6 1125 67.4
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1340.9 1090 67.2
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1340.5 1085 66.9
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1337.0 968 69.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1333.5 966 69.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1333.2 967 69.0
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1332.4 1104 67.0
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1320.8 1193 61.4
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1320.4 1000 68.4
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1317.8 967 69.0
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1317.0 1085 65.4
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1316.2 967 68.9
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1316.2 967 68.9
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1308.9 1109 65.1
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1308.5 1071 66.6
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1306.6 1116 64.3
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1301.6 1081 64.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1291.2 1085 65.3
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1289.2 882 73.5
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1285.0 932 69.2
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1285.0 1035 68.8
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1270.8 1069 63.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1270.0 1046 64.7
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1255.4 1216 58.8
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1249.6 1111 62.4
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1248.4 1088 65.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1244.6 912 70.3
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1216.8 907 68.5
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1159.8 1082 58.3
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1143.3 893 63.8
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1128.6 903 61.7
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 3.0e-311 1072.0 884 60.4
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.5e-307 1059.7 1065 57.6
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 2.9e-306 1055.4 693 76.3
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.8e-306 1055.0 691 76.4
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 4.4e-262 908.7 690 68.0
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.7e-258 896.7 755 58.3
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 8.6e-250 867.8 648 68.1
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.8e-245 852.8 559 75.7
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.4e-238 829.3 642 65.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-174 618.2 584 56.8
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.7e-168 596.7 522 67.6
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 5.9e-150 536.2 395 67.6
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 6.8e-138 496.1 318 77.0
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.4e-127 461.1 408 69.9
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.2e-121 442.2 392 70.7
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.9e-120 436.8 464 53.2
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.1e-114 419.1 346 59.0
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.1e-84 319.3 324 55.2
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 3.1e-82 311.2 251 61.8
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 6.9e-82 310.1 1067 27.0
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-79 302.4 289 55.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.2e-79 301.2 278 56.5
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 7.1e-79 300.1 245 62.9
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 6.5e-72 276.9 1027 26.2
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 6.9e-58 230.3 151 72.8
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 7.7e-57 226.9 177 64.4
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.1e-53 214.2 387 35.7
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.8e-50 205.7 145 69.0
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.7e-44 183.3 105 86.7
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.3e-43 183.0 217 47.9
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 8.2e-43 180.3 99 82.8
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 4.1e-42 177.9 103 77.7
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 5.9e-41 174.1 264 44.3
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.9e-40 171.8 149 61.1
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.7e-38 165.2 240 39.6
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.7e-38 164.5 108 71.3
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 3.5e-33 148.3 110 66.4
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.7e-32 146.0 120 60.0
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.0e-32 144.4 119 58.8
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.4e-31 140.2 93 76.3
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.8e-29 133.7 507 26.6
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 9.8e-28 130.2 150 50.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.3e-27 129.8 250 36.4
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 3.7e-27 128.3 234 37.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 7.0e-26 124.0 170 43.5
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.7e-25 120.6 89 73.0
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 6.1e-22 110.9 283 38.2
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.5e-20 106.3 97 64.9
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.7e-19 101.7 59 79.7
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.7e-19 101.7 104 55.8
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.1e-18 100.1 108 52.8
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.1e-18 100.1 108 52.8
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.1e-18 100.1 108 52.8
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.5e-17 95.1 134 43.3
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.9e-17 94.4 67 65.7
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-16 92.8 79 57.0
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.9e-16 92.0 80 58.8
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.9e-15 89.4 79 54.4
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.5e-15 89.0 49 83.7
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 2.5e-15 89.0 47 93.6
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.2e-13 81.3 61 65.6
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 3.7e-11 75.1 79 50.6
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.2e-10 72.0 75 52.0
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 3.2e-10 72.0 88 51.1
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 9.2e-10 70.5 79 48.1
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 7.8e-09 67.4 66 53.0
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.0e-08 67.0 61 49.2
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.0e-08 64.7 57 63.2
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 2.5e-07 62.4 82 46.3
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 2.1e-06 59.3 71 50.7
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 2.8e-06 58.9 146 25.3
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 4.7e-06 58.2 60 48.3
CBR_g50096 Chara braunii HOM05D026299 ORTHO05D028720 4.7e-06 58.2 242 24.0


User provided reference genes

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