Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 4.6e-118 427.9 219 100.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.3e-75 287.0 219 69.4
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.6e-73 279.3 219 68.9
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 5.7e-60 235.0 218 58.7
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 9.3e-55 217.6 229 51.5
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.5e-52 209.5 220 53.2
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 4.8e-51 205.3 218 53.2
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.0e-49 199.9 216 52.3
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 7.7e-49 198.0 214 51.9
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.2e-48 196.4 217 52.5
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 2.9e-48 196.1 217 52.5
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 6.5e-48 194.9 220 50.5
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 8.5e-48 194.5 181 54.7
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.1e-47 194.1 212 51.4
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 5.5e-47 191.8 207 49.8
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.2e-46 190.7 215 49.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.6e-46 190.3 213 50.2
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 2.1e-46 189.9 220 48.6
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.1e-46 189.9 220 47.7
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.1e-46 189.9 212 48.6
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 3.6e-46 189.1 207 48.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 6.1e-46 188.3 220 48.6
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.8e-45 186.8 216 51.9
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.8e-45 186.8 207 48.8
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.0e-45 186.0 222 49.5
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 3.9e-45 185.7 216 49.1
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.7e-45 184.9 210 49.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 8.8e-45 184.5 214 48.6
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 1.1e-44 184.1 219 50.2
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.6e-44 183.0 214 51.9
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 4.4e-44 182.2 217 47.0
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.4e-44 182.2 222 48.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.7e-44 181.8 213 49.3
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 3.7e-43 179.1 217 47.5
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.3e-43 178.3 217 50.7
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 6.3e-43 178.3 213 47.4
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 8.2e-43 177.9 163 58.3
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 8.2e-43 177.9 212 47.6
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.1e-42 177.6 207 46.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.1e-42 177.6 210 45.2
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.1e-42 177.6 208 44.7
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.4e-42 177.2 223 48.4
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.4e-42 177.2 219 46.6
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 3.1e-42 176.0 223 48.0
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.1e-42 174.5 220 46.8
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 9.1e-42 174.5 208 46.6
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.0e-41 173.3 208 46.6
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 3.4e-41 172.6 207 44.4
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.5e-41 172.2 226 47.8
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 5.9e-41 171.8 217 45.6
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.0e-40 171.0 215 46.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.0e-40 171.0 214 49.5
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.3e-40 170.6 221 46.6
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 3.8e-40 169.1 214 45.8
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.8e-40 169.1 209 45.9
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 3.8e-40 169.1 217 47.9
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 8.5e-40 167.9 212 49.1
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 8.5e-40 167.9 172 50.6
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 8.5e-40 167.9 173 50.3
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.1e-39 167.5 219 45.7
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.9e-39 166.8 219 44.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.9e-39 166.8 179 50.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.9e-39 166.8 214 45.8
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 3.2e-39 166.0 221 46.6
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 4.2e-39 165.6 213 46.9
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 5.5e-39 165.2 213 46.9
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.6e-38 163.7 219 43.8
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.7e-38 162.9 175 49.7
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.7e-38 162.9 175 49.7
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 3.6e-38 162.5 219 43.4
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 3.6e-38 162.5 224 45.1
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 3.6e-38 162.5 224 45.1
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.7e-38 162.2 218 44.5
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.0e-37 161.0 224 44.2
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-37 160.6 170 48.8
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.4e-37 160.6 224 45.1
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 5.2e-37 158.7 214 42.5
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 7.4e-36 154.8 216 44.0
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 6.3e-35 151.8 137 57.7
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 6.3e-35 151.8 216 44.9
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.4e-34 150.6 189 48.1
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.4e-34 150.6 214 42.1
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 4.1e-34 149.1 177 49.2
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 7.0e-34 148.3 226 43.8
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.6e-33 146.4 216 39.8
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.9e-33 145.2 170 48.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 5.0e-32 142.1 297 35.4
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 3.2e-31 139.4 212 45.3
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 3.6e-30 136.0 210 44.3
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 4.7e-30 135.6 223 40.4
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.2e-29 132.1 137 50.4
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.2e-28 131.0 137 50.4
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.5e-28 130.6 192 38.5
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.0e-28 130.2 138 49.3
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 2.0e-28 130.2 137 52.6
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.3e-28 129.4 138 49.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 4.4e-28 129.0 192 38.5
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 4.4e-28 129.0 184 40.8
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 9.7e-28 127.9 187 40.6
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 9.7e-28 127.9 138 48.6
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.1e-26 124.4 135 49.6
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.4e-26 123.2 225 35.1
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 3.1e-26 122.9 113 55.8
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 4.1e-26 122.5 139 46.0
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 7.0e-26 121.7 214 37.4
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 9.1e-26 121.3 222 35.6
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.6e-25 120.6 190 38.4
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.5e-25 119.4 177 39.5
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 3.5e-25 119.4 121 52.9
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 4.5e-25 119.0 145 46.9
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 5.9e-25 118.6 209 36.4
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 5.9e-25 118.6 187 39.0
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 5.9e-25 118.6 181 38.7
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 7.7e-25 118.2 197 37.6
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.2e-24 116.7 177 39.5
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.2e-24 116.7 207 35.7
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 2.9e-24 116.3 153 39.9
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.8e-24 115.9 173 39.3
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 3.8e-24 115.9 192 36.5
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 5.0e-24 115.5 209 35.9
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 5.0e-24 115.5 130 42.3
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 8.5e-24 114.8 190 40.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 8.5e-24 114.8 216 33.8
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.5e-23 114.0 190 36.3
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.5e-23 113.2 197 37.1
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.5e-23 113.2 136 44.9
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.5e-23 113.2 150 42.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 5.5e-23 112.1 180 38.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 9.4e-23 111.3 139 45.3
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.6e-22 110.5 150 41.3
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 3.6e-22 109.4 144 38.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.4e-21 107.5 123 49.6
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.8e-21 107.1 167 34.7
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.2e-20 104.4 172 35.5
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.5e-20 104.0 211 32.2
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 1.5e-20 104.0 87 57.5
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.0e-20 103.6 134 44.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.4e-20 102.4 85 57.6
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 5.7e-20 102.1 138 41.3
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.8e-20 101.3 123 48.0
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.3e-19 100.9 80 66.2
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.8e-19 99.8 161 36.0
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.1e-18 97.8 159 37.7
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 7.7e-17 91.7 76 57.9
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.7e-16 90.5 180 32.8
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.2e-16 90.1 95 50.5
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 3.8e-16 89.4 117 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.6e-14 82.8 137 36.5
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 1.8e-13 80.5 99 47.5
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 5.7e-12 75.5 122 38.5
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 2.8e-11 73.2 73 54.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 3.7e-11 72.8 121 34.7
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.9e-11 72.4 122 37.7
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 1.1e-10 71.2 87 46.0
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.4e-10 70.9 184 31.5
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.4e-10 70.1 87 46.0
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.4e-10 70.1 108 41.7
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.1e-10 69.3 99 42.4
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.2e-09 67.8 116 34.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-09 67.8 236 30.1
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 1.6e-09 67.4 88 42.0
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.0e-08 64.7 97 35.1
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 6.6e-08 62.0 85 42.4
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.1e-07 61.2 38 68.4
Nn3g18490 Nelumbo nucifera HOM05D051960 ORTHO05D005244 3.6e-06 56.2 79 40.5


User provided reference genes

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