Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 2.8e-205 718.4 361 100.0
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.6e-112 410.2 379 58.0
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.9e-105 386.7 384 54.7
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.1e-104 383.3 381 54.3
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 3.6e-104 382.5 341 57.8
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 4.4e-102 375.6 398 52.3
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 7.5e-102 374.8 398 52.3
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 2.4e-100 369.8 375 49.9
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 3.2e-100 369.4 381 52.8
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 7.1e-100 368.2 360 53.3
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 2.1e-99 366.7 357 52.9
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 4.6e-99 365.5 354 53.1
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 1.7e-98 363.6 384 51.3
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 5.1e-98 362.1 361 52.1
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 6.6e-98 361.7 383 52.2
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.5e-97 359.8 381 50.9
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 3.3e-97 359.4 375 52.0
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 5.6e-97 358.6 379 51.2
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.6e-96 355.9 337 52.8
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 3.6e-96 355.9 337 53.4
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-95 354.4 388 49.7
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 1.4e-95 354.0 390 51.0
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.8e-95 353.6 383 50.7
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 1.5e-94 350.5 353 51.3
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 3.4e-94 349.4 366 50.8
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 3.4e-94 349.4 366 50.3
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 7.6e-94 348.2 444 46.4
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 2.2e-93 346.7 376 50.0
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 6.4e-93 345.1 381 49.6
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 2.4e-92 343.2 358 50.6
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 9.2e-92 341.3 379 51.7
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 7.8e-91 338.2 329 52.9
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 7.8e-91 338.2 385 50.1
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.7e-90 337.0 384 47.4
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 3.0e-90 336.3 380 50.0
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 3.9e-90 335.9 364 50.3
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 1.9e-89 333.6 352 51.4
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 3.3e-89 332.8 382 49.5
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 4.3e-89 332.4 374 48.7
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 5.6e-89 332.0 341 51.6
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 5.6e-89 332.0 363 50.7
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 4.7e-88 328.9 369 48.0
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.1e-87 327.8 344 51.5
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.1e-87 327.8 348 50.9
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 4.0e-87 325.9 368 49.5
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 5.8e-86 322.0 384 47.1
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.3e-85 320.9 372 48.9
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 1.7e-85 320.5 355 46.8
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.7e-85 320.5 369 49.3
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 2.9e-85 319.7 360 47.8
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.8e-85 319.3 366 49.5
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.1e-84 317.8 370 48.4
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 3.2e-84 316.2 372 47.6
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 4.2e-84 315.8 375 46.1
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 4.6e-83 312.4 360 46.7
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 4.6e-83 312.4 373 46.4
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 7.8e-83 311.6 354 48.9
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.3e-82 310.8 371 44.5
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.3e-82 310.8 312 49.4
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 3.0e-82 309.7 372 44.4
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 3.9e-82 309.3 374 47.6
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 6.6e-82 308.5 371 44.5
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 6.6e-82 308.5 374 47.1
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 8.7e-82 308.1 364 46.2
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 8.7e-82 308.1 391 44.5
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.5e-81 307.4 382 43.7
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.5e-81 307.4 376 46.8
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.5e-81 306.6 371 44.7
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 7.3e-81 305.1 330 49.7
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 7.3e-81 305.1 375 47.5
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.3e-80 304.3 392 45.9
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.3e-80 304.3 369 46.1
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 1.6e-80 303.9 358 46.4
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 2.8e-80 303.1 377 46.9
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.8e-80 302.4 402 44.8
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 1.1e-79 301.2 357 45.4
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 1.1e-79 301.2 380 44.7
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 9.0e-79 298.1 355 45.9
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 3.4e-78 296.2 365 46.8
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.4e-78 296.2 354 46.0
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 9.9e-78 294.7 376 44.1
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.2e-77 293.5 372 46.0
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 2.3e-74 283.5 333 44.7
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 1.4e-68 264.2 325 45.2
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.5e-65 254.2 291 48.1
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 4.3e-65 252.7 465 35.1
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 2.1e-64 250.4 314 42.0
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 6.9e-63 245.4 330 42.4
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 6.7e-58 228.8 383 37.6
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 1.5e-57 227.6 257 46.3
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 2.5e-57 226.9 358 36.9
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 6.3e-56 222.2 241 47.7
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 4.6e-51 206.1 236 45.8
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 6.7e-50 202.2 367 34.6
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 6.3e-48 195.7 276 44.9
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 5.3e-47 192.6 216 47.7
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 9.1e-47 191.8 354 35.3
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 4.5e-46 189.5 184 54.3
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.1e-44 184.9 223 43.9
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.1e-44 184.9 299 34.4
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.5e-44 183.7 245 42.0
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.6e-41 173.7 202 47.5
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 4.8e-40 169.5 208 43.8
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.1e-36 158.3 117 68.4
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.6e-35 154.5 159 54.7
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.4e-33 146.4 327 32.4
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 7.7e-30 135.6 205 35.6
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 2.9e-29 133.7 243 31.3
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 7.2e-28 129.0 128 54.7
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.8e-26 124.4 126 46.0
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 4.8e-24 116.3 185 39.5
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.7e-21 107.8 238 30.7
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.0e-14 84.3 86 38.4
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 3.6e-11 73.6 126 36.5
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.0e-10 70.1 73 38.4
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.2e-09 68.6 71 38.0
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 2.2e-08 64.3 110 40.0
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.4e-07 61.6 244 26.2
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.5e-06 56.6 78 48.7
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 7.8e-06 55.8 55 50.9


User provided reference genes

Program Settings