Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.2e-246 855.1 416 100.0
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.3e-209 733.0 409 84.8
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.1e-209 730.3 407 84.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 3.1e-208 728.4 407 83.8
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 6.9e-208 727.2 405 85.4
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.4e-207 724.9 407 84.0
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 7.6e-207 723.8 407 83.5
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 7.6e-207 723.8 407 83.8
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.9e-206 721.8 403 84.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.2e-205 718.4 407 83.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.2e-205 718.0 404 83.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.5e-205 717.6 405 83.7
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 7.1e-205 717.2 405 82.7
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 7.9e-204 713.8 405 81.7
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.0e-203 713.4 407 82.3
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.3e-203 713.0 420 82.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 5.7e-202 707.6 407 81.1
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.6e-201 706.1 405 82.2
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 6.3e-201 704.1 406 80.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.1e-200 703.4 404 81.7
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 4.1e-200 701.4 407 79.9
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 5.3e-200 701.0 420 79.5
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.9e-200 700.7 405 81.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 9.0e-200 700.3 407 81.1
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.5e-199 699.5 406 80.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-199 699.1 403 79.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.6e-199 698.7 406 80.0
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.6e-199 698.7 405 79.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 3.4e-199 698.4 405 80.5
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 4.5e-199 698.0 407 79.4
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 5.9e-199 697.6 406 80.5
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 7.6e-199 697.2 396 83.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.0e-198 696.8 403 80.6
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-198 696.4 404 80.2
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.3e-198 696.4 404 80.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.9e-198 695.3 404 80.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.0e-198 694.5 399 80.5
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 6.5e-198 694.1 407 79.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.5e-198 694.1 408 80.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.1e-197 693.3 404 79.7
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.1e-197 693.3 407 79.4
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.4e-197 693.0 404 79.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.4e-197 693.0 407 79.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.9e-197 692.6 399 81.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.5e-197 692.2 406 79.6
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.5e-197 692.2 405 79.3
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.2e-197 691.8 399 79.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.2e-197 691.4 403 79.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 4.2e-197 691.4 405 78.8
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 7.2e-197 690.6 403 78.9
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 9.3e-197 690.3 403 79.2
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 9.3e-197 690.3 403 79.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.2e-196 689.9 447 74.3
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.1e-196 689.1 403 79.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.7e-196 688.7 399 79.9
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 3.5e-196 688.3 399 79.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 3.5e-196 688.3 404 79.5
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.1e-196 687.6 405 79.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 6.1e-196 687.6 407 79.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 6.1e-196 687.6 403 79.2
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.9e-196 687.2 399 79.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.0e-195 686.8 408 78.7
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.0e-195 686.8 407 77.9
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.0e-195 686.8 405 77.3
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 3.0e-195 685.3 404 77.7
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 3.9e-195 684.9 405 78.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.9e-195 684.9 405 78.8
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.9e-195 684.9 403 79.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.9e-195 684.9 404 80.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.7e-195 684.1 406 78.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 8.7e-195 683.7 406 79.6
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.9e-194 682.6 414 78.0
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.5e-194 682.2 405 78.8
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.3e-194 681.8 406 78.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 5.7e-194 681.0 391 82.9
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.2e-193 679.1 404 78.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.2e-193 679.1 405 78.8
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 3.7e-193 678.3 407 79.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-192 676.8 407 76.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.8e-192 676.0 398 79.4
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-192 675.6 414 77.3
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 9.0e-192 673.7 405 77.5
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.9e-191 671.0 407 77.1
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.2e-190 669.1 407 76.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.9e-190 668.7 405 78.0
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.9e-190 668.7 491 68.4
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.1e-189 666.8 403 76.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.1e-189 666.8 441 72.6
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.5e-189 664.5 403 76.9
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 7.2e-189 664.1 407 74.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.9e-188 660.6 405 76.0
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.8e-185 651.4 407 74.4
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.1e-184 648.3 403 75.7
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 5.7e-178 627.9 403 73.2
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.2e-177 625.9 405 73.8
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.3e-174 616.7 395 73.7
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 3.2e-173 612.1 409 70.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.2e-173 611.7 403 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 8.0e-172 607.4 396 73.0
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.0e-171 607.1 410 69.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.8e-171 606.3 342 83.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 2.2e-169 599.4 407 67.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 6.3e-169 597.8 408 67.4
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 8.5e-166 587.4 404 68.8
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.5e-165 585.9 390 72.8
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.0e-163 578.6 405 65.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.2e-162 577.0 309 86.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 4.4e-162 575.1 395 68.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.8e-161 571.6 405 70.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 5.5e-157 558.1 406 64.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.0e-155 552.0 406 63.3
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.2e-154 550.4 309 81.9
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.3e-150 537.0 411 60.8
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 2.3e-150 536.2 400 62.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.3e-149 531.9 307 79.8
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.0e-147 527.3 411 59.6
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.5e-146 523.5 325 76.3
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.0e-146 523.1 405 62.0
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 8.3e-145 517.7 351 69.8
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.5e-143 512.3 337 70.9
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.6e-143 511.9 408 65.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.0e-142 510.8 294 82.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.6e-130 469.5 395 57.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 4.9e-121 438.7 412 52.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.5e-117 427.2 354 61.6
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.5e-109 399.8 224 84.4
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 3.9e-102 375.9 243 74.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.9e-97 359.8 307 59.0
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-74 284.3 157 86.6
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.5e-74 282.7 197 67.0
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 8.5e-73 278.5 192 68.2
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-72 277.7 176 72.2
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.0e-65 252.7 196 66.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.8e-54 217.6 235 54.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-50 204.5 113 81.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.5e-50 203.0 107 83.2
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.0e-49 199.5 113 79.6
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.0e-43 179.1 102 79.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.6e-37 160.6 88 85.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-31 141.7 165 47.9
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-31 140.6 93 71.0
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.8e-31 140.6 204 39.2
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 6.1e-31 139.4 82 81.7
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 4.0e-30 136.7 107 61.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.1e-27 126.7 87 75.9
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.8e-22 111.3 80 61.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.7e-20 103.6 73 63.0
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.7e-20 103.6 242 31.0
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.4e-19 99.8 57 71.9
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 7.0e-19 99.4 63 74.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.7e-12 78.2 36 86.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.9e-12 77.4 118 39.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.9e-12 76.6 38 81.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-08 65.1 36 75.0
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 5.6e-08 63.2 69 52.2
Glyma.13G081500 Glycine max HOM05D002051 ORTHO05D002041 1.6e-07 61.6 274 23.4


User provided reference genes

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