Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.9e-83 312.8 194 100.0
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.0e-33 145.6 190 50.5
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 3.7e-31 139.0 190 45.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.4e-30 136.3 201 46.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.2e-30 136.0 165 53.3
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 9.2e-30 134.4 196 46.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.6e-29 133.7 197 46.2
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.5e-29 132.5 186 44.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 4.6e-29 132.1 183 44.8
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.3e-28 130.6 196 42.9
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.7e-28 130.2 186 44.1
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.3e-28 129.8 196 43.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.3e-28 129.8 193 46.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-28 129.0 184 41.8
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.9e-28 129.0 186 43.5
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.9e-28 129.0 185 45.4
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 5.1e-28 128.6 187 43.9
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.6e-28 128.3 189 40.2
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.3e-27 125.9 187 43.3
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.3e-27 125.6 229 38.9
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 4.3e-27 125.6 185 44.3
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.6e-27 125.2 184 42.9
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 7.3e-27 124.8 187 43.3
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.3e-27 124.8 199 39.7
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 9.5e-27 124.4 193 43.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-26 124.0 187 42.8
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-26 124.0 187 42.8
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-26 124.0 187 42.8
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.6e-26 123.6 210 47.6
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.1e-26 123.2 188 43.1
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.1e-26 123.2 187 42.8
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.1e-26 123.2 197 47.2
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.6e-26 122.5 191 48.7
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.6e-26 122.5 191 48.7
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 4.7e-26 122.1 184 41.8
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.2e-26 121.7 184 42.9
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.2e-26 121.7 194 43.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.2e-26 121.7 189 40.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 8.1e-26 121.3 199 46.7
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.1e-25 120.9 168 47.6
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.4e-25 120.6 190 43.7
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.3e-25 119.8 184 42.4
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.3e-25 119.8 188 42.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.3e-25 119.8 197 41.1
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.8e-25 118.2 190 41.1
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.8e-25 118.2 188 44.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 6.8e-25 118.2 187 41.7
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 8.9e-25 117.9 184 42.4
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 8.9e-25 117.9 193 40.4
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.0e-24 116.7 191 48.2
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.0e-24 116.7 196 41.3
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.6e-24 116.3 191 46.1
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.4e-24 115.9 194 40.2
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 4.4e-24 115.5 196 44.9
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 5.8e-24 115.2 187 39.6
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 5.8e-24 115.2 177 45.8
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.3e-23 114.0 185 42.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 2.9e-23 112.8 187 41.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 8.4e-23 111.3 186 43.0
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.4e-23 111.3 191 40.3
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.2e-22 109.4 192 39.6
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.1e-22 108.2 185 37.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 7.1e-22 108.2 180 37.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 7.1e-22 108.2 210 33.8
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.2e-21 107.5 203 38.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.7e-21 106.3 203 34.5
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.5e-21 105.9 174 38.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.6e-21 105.5 201 39.8
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 7.8e-21 104.8 221 33.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.0e-20 104.4 195 36.9
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.7e-20 103.6 193 36.8
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.3e-20 103.2 208 35.1
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.3e-20 103.2 159 44.0
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.9e-20 102.4 207 43.5
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.1e-20 102.1 209 34.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 5.1e-20 102.1 192 36.5
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 6.6e-20 101.7 213 34.3
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 6.6e-20 101.7 163 45.4
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-19 100.1 164 40.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.9e-19 100.1 193 36.8
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-19 100.1 202 42.1
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.5e-19 99.8 211 41.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.5e-19 99.8 185 41.1
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 3.3e-19 99.4 211 34.1
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.3e-19 99.4 210 43.3
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.3e-19 99.0 195 41.5
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 5.6e-19 98.6 220 40.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.3e-19 98.2 195 36.4
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.3e-19 98.2 169 40.2
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.3e-19 98.2 169 40.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.3e-19 98.2 72 68.1
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 9.6e-19 97.8 184 41.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-18 97.4 164 40.2
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-18 96.7 169 39.6
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.8e-18 96.3 213 34.3
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 3.6e-18 95.9 225 32.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 4.7e-18 95.5 209 33.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.2e-18 95.1 211 39.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.2e-18 95.1 205 34.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 8.1e-18 94.7 209 34.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.8e-17 93.6 194 34.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.8e-17 93.6 206 35.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.0e-17 92.4 200 32.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 6.9e-17 91.7 165 39.4
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 6.9e-17 91.7 165 39.4
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.5e-16 90.5 185 34.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.5e-16 90.5 197 34.5
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.5e-16 90.5 209 33.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.0e-16 90.1 223 41.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-16 89.7 175 33.1
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.6e-16 89.7 185 31.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.6e-16 89.7 195 38.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.4e-16 89.4 165 38.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.4e-16 89.4 80 61.2
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 4.4e-16 89.0 178 39.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 4.4e-16 89.0 178 39.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 4.4e-16 89.0 178 39.9
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 4.4e-16 89.0 194 32.5
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 5.8e-16 88.6 179 39.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.8e-16 88.6 199 33.7
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 5.8e-16 88.6 201 31.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 9.9e-16 87.8 180 38.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.3e-15 87.4 185 41.1
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.7e-15 87.0 191 36.1
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.7e-15 87.0 216 31.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.9e-15 86.3 221 28.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.8e-15 85.9 73 64.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.8e-15 85.9 188 42.0
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.8e-15 85.9 191 39.8
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 4.9e-15 85.5 220 35.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 6.4e-15 85.1 76 61.8
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 8.4e-15 84.7 177 37.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 8.4e-15 84.7 178 38.2
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.1e-14 84.3 188 31.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.4e-14 84.0 218 35.3
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.9e-14 83.6 212 30.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 5.4e-14 82.0 208 30.8
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.3e-14 81.3 205 31.2
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.6e-13 80.5 177 35.0
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.1e-13 80.1 178 33.7
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 6.0e-13 78.6 206 29.1
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.3e-12 77.4 159 39.0
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.3e-12 77.4 220 28.6
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 6.6e-12 75.1 157 36.9
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 6.6e-12 75.1 157 36.9
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-11 74.3 161 37.3
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.1e-11 74.3 203 37.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.5e-11 73.9 216 28.7
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 4.3e-11 72.4 160 33.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 4.3e-11 72.4 160 33.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.3e-11 72.4 182 30.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 4.3e-11 72.4 197 31.5
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 8.1e-10 68.2 212 34.4
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 8.1e-10 68.2 188 30.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.4e-09 67.4 69 50.7
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.4e-09 67.4 244 24.6
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.1e-09 66.2 111 47.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.1e-09 66.2 205 26.3
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 4.0e-09 65.9 230 27.4
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 6.9e-09 65.1 59 55.9
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 9.0e-09 64.7 78 43.6
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.5e-08 62.4 74 44.6
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 5.8e-08 62.0 181 29.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.3e-07 60.8 186 31.7
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.3e-07 60.8 248 30.6
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.9e-07 58.9 179 28.5
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.9e-07 58.9 186 31.2
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.1e-06 57.8 181 30.4
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.2e-06 56.2 43 62.8
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.2e-06 55.8 60 50.0
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 4.2e-06 55.8 175 29.7


User provided reference genes

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