Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.6e-136 488.4 276 100.0
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 7.7e-123 444.1 277 90.6
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 7.7e-123 444.1 277 90.3
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 89.2
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.8e-122 441.8 277 89.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 89.2
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 88.8
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 88.8
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.5e-121 438.0 277 88.8
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 89.9
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.7
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 88.8
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 88.8
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 87.7
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 88.1
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 87.7
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.1e-120 436.0 276 87.3
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 88.8
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 87.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 87.7
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 6.1e-120 434.5 277 87.4
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 87.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 87.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 87.7
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.8e-119 433.0 275 88.0
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 87.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 3.0e-119 432.2 277 86.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.0e-119 432.2 275 88.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 87.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 86.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 86.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 87.4
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 87.4
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 87.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 87.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 86.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 87.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 86.3
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 86.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 85.9
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 85.6
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 4.4e-118 428.3 278 86.3
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 4.4e-118 428.3 274 87.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 86.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 85.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 85.2
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 86.3
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.7e-117 426.4 274 86.9
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.9
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 85.9
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 85.2
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.9e-117 424.9 283 85.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 6.3e-117 424.5 277 85.6
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 6.3e-117 424.5 277 85.2
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.3e-117 424.5 277 85.6
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 85.2
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.4e-116 423.3 274 85.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.4e-116 423.3 276 86.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.4e-116 422.5 277 85.6
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.4e-116 422.5 277 85.2
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 5.4e-116 421.4 279 86.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.2e-115 420.2 277 83.4
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.2e-115 420.2 276 85.9
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.5e-115 418.7 275 86.2
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.5e-115 418.7 275 86.2
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 7.8e-115 417.5 261 90.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 3.8e-114 415.2 276 84.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.5e-113 413.3 276 84.4
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.5e-113 413.3 277 82.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.5e-113 413.3 321 75.4
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 9.5e-113 410.6 261 88.1
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 9.5e-113 410.6 261 88.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.1e-112 409.5 301 77.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.7e-112 408.3 277 84.5
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.7e-112 408.3 276 83.7
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-111 406.4 320 74.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 82.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 4.4e-110 401.7 318 73.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 5.8e-110 401.4 278 82.4
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.3e-109 400.2 270 85.9
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.2e-109 399.4 277 78.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.9e-109 399.1 274 84.7
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 3.2e-108 395.6 277 81.2
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-107 392.9 272 79.8
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.0e-106 390.6 283 78.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.3e-106 389.4 254 86.6
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.9e-106 388.7 275 78.9
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.0e-106 388.3 274 77.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 8.6e-106 387.5 299 72.6
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-105 387.1 317 69.1
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.3e-105 385.2 256 84.0
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.2e-104 383.6 276 78.3
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 4.7e-104 381.7 278 76.3
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.2e-104 381.3 269 77.7
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 3.1e-103 379.0 264 81.1
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.2e-103 378.3 278 77.0
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 7.5e-102 374.4 256 83.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 4.9e-101 371.7 281 77.6
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 6.4e-101 371.3 260 79.6
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.4e-100 369.4 353 60.9
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-100 369.0 260 80.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.2e-99 367.1 262 78.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 6.6e-98 361.3 331 67.7
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.6e-94 349.4 229 84.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 6.4e-93 344.7 230 83.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.4e-92 343.6 222 87.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 2.1e-91 339.7 276 65.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-89 333.6 249 76.3
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-89 333.6 249 76.3
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.5e-89 332.8 268 71.6
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 9.5e-89 330.9 277 67.5
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.2e-88 330.5 222 84.7
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 5.8e-86 321.6 281 66.2
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 6.4e-85 318.2 224 82.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.9e-84 316.6 274 62.8
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.9e-84 316.6 284 66.9
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.2e-84 315.8 313 64.9
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-81 306.6 274 67.5
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-80 303.1 274 67.2
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.3e-73 279.3 258 64.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 7.9e-67 258.1 287 52.3
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 5.1e-66 255.4 278 55.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 6.7e-66 255.0 186 76.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.0e-58 231.1 180 76.7
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.8e-56 223.0 155 74.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 2.0e-54 216.9 138 81.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 3.2e-52 209.5 144 86.8
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.5e-51 206.1 129 82.9
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.3e-50 204.1 132 79.5
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-46 188.7 300 44.3
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.1e-41 174.5 97 90.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 9.7e-41 171.4 106 82.1
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.2e-40 170.2 90 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.8e-34 150.6 81 91.4
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.7e-32 142.9 155 56.8
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.1e-31 139.8 90 78.9
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.8e-29 132.9 74 90.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.8e-29 132.9 74 90.5
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.8e-29 132.9 80 82.5
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.8e-23 114.0 256 35.9
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-20 104.4 157 44.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 9.4e-20 101.7 160 45.0
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.8e-18 97.4 147 41.5
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-18 96.3 104 56.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.2e-17 94.7 165 37.6
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 5.7e-17 92.4 57 77.2
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.5e-17 92.0 67 89.6
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.7e-16 90.9 153 39.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.2e-16 90.5 176 38.1
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.2e-16 90.5 73 72.6
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-15 87.0 67 82.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-14 84.3 174 33.3
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.7e-13 80.9 46 87.0
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.5e-13 78.6 46 84.8
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 7.2e-12 75.5 43 81.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-11 74.3 157 39.5
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.7e-11 73.6 158 36.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 8.0e-11 72.0 43 81.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.0e-10 71.6 263 30.8
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.4e-09 66.2 154 39.6
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 4.5e-06 56.2 38 71.1


User provided reference genes

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