Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031561 Daucus carota HOM05D007282 ORTHO05D009214 2.5e-40 168.3 84 100.0
DCAR_013409 Daucus carota HOM05D007282 ORTHO05D009214 3.6e-31 137.9 71 94.4
PGR142G4217 Punica granatum HOM05D007282 ORTHO05D009214 7.3e-24 113.6 80 68.8
SalBow3G4659 Salvia bowleyana HOM05D007282 ORTHO05D009214 2.8e-23 111.7 80 68.8
ECA248G2482 Erigeron canadensis HOM05D005132 ORTHO05D005823 1.4e-22 109.4 80 67.5
Migut.J01006 Erythranthe guttata HOM05D007282 ORTHO05D009214 1.8e-22 109.0 80 68.8
Glyma.10G075000 Glycine max HOM05D007282 ORTHO05D009214 1.8e-22 109.0 80 66.2
Thecc.05G094100 Theobroma cacao HOM05D007282 ORTHO05D009214 3.1e-22 108.2 80 68.8
Lsat_1_v5_gn_5_165601 Lactuca sativa HOM05D007282 ORTHO05D009214 4.0e-22 107.8 77 67.5
Cc00_g15490 Coffea canephora HOM05D007282 ORTHO05D009214 5.2e-22 107.5 80 67.5
MD12G1029300 Malus domestica HOM05D007282 ORTHO05D009214 5.2e-22 107.5 80 63.8
Eucgr.K02566 Eucalyptus grandis HOM05D007282 ORTHO05D009214 6.8e-22 107.1 80 67.5
Glyma.02G201500 Glycine max HOM05D007282 ORTHO05D009214 8.9e-22 106.7 80 65.0
Gohir.D09G133600 Gossypium hirsutum HOM05D007282 ORTHO05D009214 8.9e-22 106.7 80 66.2
Peaxi162Scf00069g00612 Petunia axillaris HOM05D007282 ORTHO05D009214 8.9e-22 106.7 80 63.8
arahy.Tifrunner.gnm1.ann1.LMCN1R Arachis hypogaea HOM05D007282 ORTHO05D009214 1.2e-21 106.3 79 64.6
arahy.Tifrunner.gnm1.ann1.TUP4W7 Arachis hypogaea HOM05D007282 ORTHO05D009214 1.2e-21 106.3 79 64.6
CANSAT64G2352 Cannabis sativa HOM05D007282 ORTHO05D009214 1.2e-21 106.3 81 69.1
Hma1.2p1_0769F.1_g215750 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 1.2e-21 106.3 80 65.0
MD14G1029600 Malus domestica HOM05D007282 ORTHO05D009214 1.2e-21 106.3 80 63.8
COL.COLO4_03547 Corchorus olitorius HOM05D007282 ORTHO05D009214 1.5e-21 105.9 79 65.8
Gorai.006G153100 Gossypium raimondii HOM05D007282 ORTHO05D009214 1.5e-21 105.9 80 65.0
HanXRQChr13g0390101 Helianthus annuus HOM05D007282 ORTHO05D009214 1.5e-21 105.9 80 60.0
Hma1.2p1_0769F.1_g215760 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 1.5e-21 105.9 78 65.4
Oeu025665.1 Olea europaea HOM05D007282 ORTHO05D009214 2.6e-21 105.1 80 66.2
Sc02g0000410 Simmondsia chinensis HOM05D007282 ORTHO05D009214 3.4e-21 104.8 84 65.5
TAR623G0904 Trochodendron aralioides HOM05D007282 ORTHO05D009214 4.4e-21 104.4 80 65.0
MSTRG.19274 Avicennia marina HOM05D007282 ORTHO05D009214 5.8e-21 104.0 80 63.8
Dinv21175 Davidia involucrata HOM05D007282 ORTHO05D009214 5.8e-21 104.0 80 65.0
CSS0014712 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 7.5e-21 103.6 80 66.2
CSS0036453 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 7.5e-21 103.6 80 66.2
Gohir.A09G141100 Gossypium hirsutum HOM05D007282 ORTHO05D009214 7.5e-21 103.6 80 65.0
GSVIVG01033882001 Vitis vinifera HOM05D007282 ORTHO05D009214 7.5e-21 103.6 80 65.0
Lj2A142T14 Lonicera japonica HOM05D007282 ORTHO05D009214 9.9e-21 103.2 80 66.2
QL07p038317 Quercus lobata HOM05D007282 ORTHO05D009214 1.3e-20 102.8 79 65.8
Sed0020389 Sechium edule HOM05D007282 ORTHO05D009214 1.3e-20 102.8 80 63.8
Nitab4.5_0001875g0020 Nicotiana tabacum HOM05D007282 ORTHO05D009214 1.7e-20 102.4 79 60.8
HPP92_001104 Vanilla planifolia HOM05D007282 ORTHO05D009214 1.7e-20 102.4 80 65.0
vmacro07443 Vaccinium macrocarpon HOM05D007282 ORTHO05D009214 2.2e-20 102.1 80 62.5
A04p27670 Brassica napus HOM05D000972 ORTHO05D009214 2.9e-20 101.7 82 64.6
BraA04t18262Z Brassica rapa HOM05D000972 ORTHO05D001783 2.9e-20 101.7 82 64.6
Nn6g34828 Nelumbo nucifera HOM05D007282 ORTHO05D009214 2.9e-20 101.7 80 63.8
TWI53G0193 Tripterygium wilfordii HOM05D007282 ORTHO05D009214 3.7e-20 101.3 80 62.5
BcaC02g07630 Brassica carinata HOM05D007282 ORTHO05D009214 4.9e-20 100.9 83 62.7
BolC4t27996H Brassica oleracea HOM05D007282 ORTHO05D009214 4.9e-20 100.9 83 62.7
Cpa.g.sc104.101 Carica papaya HOM05D007282 ORTHO05D009214 4.9e-20 100.9 80 62.5
Thhalv10017280m.g Eutrema salsugineum HOM05D007282 ORTHO05D009214 4.9e-20 100.9 83 62.7
Sp4g18380 Schrenkiella parvula HOM05D007282 ORTHO05D009214 4.9e-20 100.9 83 62.7
Zm00001eb366810 Zea mays HOM05D007282 ORTHO05D009214 6.4e-20 100.5 80 60.0
ClCG04G010160 Citrullus lanatus HOM05D007282 ORTHO05D009214 8.3e-20 100.1 80 62.5
Sabra06G0161800 Salix brachista HOM05D007282 ORTHO05D009214 8.3e-20 100.1 80 62.5
MELO3C024557.2 Cucumis melo HOM05D007282 ORTHO05D009214 1.1e-19 99.8 80 62.5
Rhsim03G0070300 Rhododendron simsii HOM05D007282 ORTHO05D009214 1.1e-19 99.8 81 61.7
BcaB06g28919 Brassica carinata HOM05D000972 ORTHO05D001783 1.4e-19 99.4 82 62.2
Lalb_Chr06g0172471 Lupinus albus HOM05D007282 ORTHO05D009214 1.4e-19 99.4 80 60.0
Phvul.007G163900 Phaseolus vulgaris HOM05D007282 ORTHO05D009214 1.4e-19 99.4 80 61.2
CiPaw.09G016500 Carya illinoinensis HOM05D007282 ORTHO05D009214 1.9e-19 99.0 81 63.0
CsaV3_6G040780 Cucumis sativus L. HOM05D007282 ORTHO05D009214 1.9e-19 99.0 80 62.5
Duzib093G1732 Durio zibethinus HOM05D007282 ORTHO05D009214 2.4e-19 98.6 79 60.8
AT2G36145 Arabidopsis thaliana HOM05D007282 ORTHO05D009214 4.1e-19 97.8 80 62.5
Aqoxy4G02730 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 5.4e-19 97.4 80 60.0
AL4G32230 Arabidopsis lyrata HOM05D007282 ORTHO05D009214 5.4e-19 97.4 80 62.5
RcHm_v2.0_Chr3g0474621 Rosa chinensis HOM05D007282 ORTHO05D009214 5.4e-19 97.4 83 57.8
Haze_19645 Corylus avellana HOM05D007282 ORTHO05D009214 7.1e-19 97.1 81 61.7
Os01g0862200 Oryza sativa ssp. japonica HOM05D007282 ORTHO05D009214 7.1e-19 97.1 80 57.5
Prupe.7G102300 Prunus persica HOM05D007282 ORTHO05D009214 7.1e-19 97.1 80 62.5
Atru.chr8.1455 Acer truncatum HOM05D007282 ORTHO05D009214 9.2e-19 96.7 80 61.2
CDE02G2307 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 9.2e-19 96.7 80 60.0
CDE08G0228 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 9.2e-19 96.7 80 58.8
CDE08G0791 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 9.2e-19 96.7 80 58.8
Lj5g0026678 Lotus japonicus HOM05D007282 ORTHO05D009214 9.2e-19 96.7 80 60.0
PSO384G4616 Papaver somniferum HOM05D007282 ORTHO05D009214 1.2e-18 96.3 81 64.2
THA.LOC104799754 Tarenaya hassleriana HOM05D007282 ORTHO05D009214 1.2e-18 96.3 80 62.5
FAN02G3890 Fragaria x ananassa HOM05D007282 ORTHO05D009214 1.6e-18 95.9 84 57.1
Carub.0004s1791 Capsella rubella HOM05D007282 ORTHO05D009214 2.1e-18 95.5 81 63.0
SGA_v2.0_scaffold31G12895 Striga asiatica HOM05D007282 ORTHO05D009214 2.1e-18 95.5 80 60.0
CARHR130380 Cardamine hirsuta HOM05D007282 ORTHO05D009214 2.7e-18 95.1 80 61.2
FvH4_6g19360 Fragaria vesca HOM05D007282 ORTHO05D009214 3.5e-18 94.7 84 56.0
PSO339G4969 Papaver somniferum HOM05D007282 ORTHO05D009214 7.8e-18 93.6 81 63.0
Ca_30898_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 1.0e-17 93.2 80 57.5
Aa31LG5G21280 Aethionema arabicum HOM05D007282 ORTHO05D009214 1.3e-17 92.8 81 59.3
Ca_22305_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 1.7e-17 92.4 80 57.5
Manes.08G027500 Manihot esculenta HOM05D000972 ORTHO05D007713 1.7e-17 92.4 74 59.5
Psat6g084240 Pisum sativum HOM05D007282 ORTHO05D009214 2.3e-17 92.0 80 57.5
Potri.006G210000 Populus trichocarpa HOM05D007282 ORTHO05D009214 3.0e-17 91.7 80 57.5
PGSC0003DMG400008863 Solanum tuberosum HOM05D007282 ORTHO05D009214 8.6e-17 90.1 80 53.8
ATR0820G206 Amborella trichopoda HOM05D007282 ORTHO05D009214 1.5e-16 89.4 82 56.1
Solyc09g010120.2 Solanum lycopersicum HOM05D007282 ORTHO05D009214 1.5e-16 89.4 80 52.5
Sopen09g004860 Solanum pennellii HOM05D007282 ORTHO05D009214 1.5e-16 89.4 80 52.5
TPR.G14774 Trifolium pratense HOM05D007282 ORTHO05D009214 1.9e-16 89.0 80 56.2
C04p65190 Brassica napus HOM05D007282 ORTHO05D009214 3.3e-16 88.2 76 61.8
EL10Ac7g16881 Beta vulgaris HOM05D007282 ORTHO05D009214 6.2e-15 84.0 81 56.8
Hund03936 Selenicereus undatus HOM05D007282 ORTHO05D009214 1.8e-14 82.4 79 55.7
Medtr1g059660 Medicago truncatula HOM05D007282 ORTHO05D009214 6.8e-14 80.5 80 53.8
AUR62006220 Chenopodium quinoa HOM05D007282 ORTHO05D009214 3.4e-13 78.2 81 56.8
AUR62036998 Chenopodium quinoa HOM05D007282 ORTHO05D009214 4.4e-13 77.8 81 55.6
AagrBONN_evm.TU.Sc2ySwM_344.5307 Anthoceros agrestis HOM05D007282 ORTHO05D009214 1.9e-11 72.4 78 46.2
Pp3c14_14160 Physcomitrium patens HOM05D007282 ORTHO05D009214 9.2e-11 70.1 78 44.9
Mapoly0153s0036 Marchantia polymorpha HOM05D007282 ORTHO05D009214 2.7e-10 68.6 79 49.4
Actinidia05405 Actinidia chinensis HOM05D005132 ORTHO05D005823 3.5e-10 68.2 52 61.5
SMO353G0249 Selaginella moellendorffii HOM05D007282 ORTHO05D009214 3.0e-09 65.1 78 44.9
TAR369G0436 Trochodendron aralioides HOM05D007282 ORTHO05D009214 1.4e-06 56.2 52 53.8


User provided reference genes

Program Settings